Going viral: next-generation sequencing applied to phage populations in the human gut

A Reyes, NP Semenkovich, K Whiteson… - Nature Reviews …, 2012 - nature.com
Over the past decade, researchers have begun to characterize viral diversity using
metagenomic methods. These studies have shown that viruses, the majority of which infect …

A field guide to eukaryotic circular single-stranded DNA viruses: insights gained from metagenomics

K Rosario, S Duffy, M Breitbart - Archives of virology, 2012 - Springer
Despite their small size and limited protein-coding capacity, the rapid evolution rates of
single-stranded DNA (ssDNA) viruses have led to their emergence as serious plant and …

Taxonomic update for mammalian anelloviruses (family Anelloviridae)

A Varsani, T Opriessnig, V Celer, F Maggi… - Archives of …, 2021 - Springer
Anelloviruses are small negative-sense single-stranded DNA viruses with genomes ranging
in size from 1.6 to 3.9 kb. The family Anelloviridae comprised 14 genera before the present …

High variety of known and new RNA and DNA viruses of diverse origins in untreated sewage

TFF Ng, R Marine, C Wang, P Simmonds… - Journal of …, 2012 - Am Soc Microbiol
Deep sequencing of untreated sewage provides an opportunity to monitor enteric infections
in large populations and for high-throughput viral discovery. A metagenomics analysis of …

Exploring the viral world through metagenomics

K Rosario, M Breitbart - Current opinion in virology, 2011 - Elsevier
Viral metagenomics, or shotgun sequencing of purified viral particles, has revolutionized the
field of environmental virology by allowing the exploration of viral communities in a variety of …

Pandemic danger to the deep: the risk of marine mammals contracting SARS-CoV-2 from wastewater

S Mathavarajah, AK Stoddart, GA Gagnon… - Science of The Total …, 2021 - Elsevier
We are in unprecedented times with the ongoing COVID-19 pandemic. The pandemic has
impacted public health, the economy and our society on a global scale. In addition, the …

Evolutionary dynamics and epidemiology of endemic and emerging coronaviruses in humans, domestic animals, and wildlife

A Islam, J Ferdous, S Islam, MA Sayeed… - Viruses, 2021 - mdpi.com
Diverse coronavirus (CoV) strains can infect both humans and animals and produce various
diseases. CoVs have caused three epidemics and pandemics in the last two decades, and …

Previously unknown and highly divergent ssDNA viruses populate the oceans

JM Labonté, CA Suttle - The ISME journal, 2013 - academic.oup.com
Single-stranded DNA (ssDNA) viruses are economically important pathogens of plants and
animals, and are widespread in oceans; yet, the diversity and evolutionary relationships …

Rapidly expanding genetic diversity and host range of the Circoviridae viral family and other Rep encoding small circular ssDNA genomes

E Delwart, L Li - Virus research, 2012 - Elsevier
The genomes of numerous circoviruses and distantly related circular ssDNA viruses
encoding a rolling circle replication initiator protein (Rep) have been characterized from the …

Deep viral blood metagenomics reveals extensive anellovirus diversity in healthy humans

M Cebriá-Mendoza, C Arbona, L Larrea, W Díaz… - Scientific Reports, 2021 - nature.com
Human blood metagenomics has revealed the presence of different types of viruses in
apparently healthy subjects. By far, anelloviruses constitute the viral family that is more …