Directed evolution: methodologies and applications

Y Wang, P Xue, M Cao, T Yu, ST Lane… - Chemical reviews, 2021 - ACS Publications
Directed evolution aims to expedite the natural evolution process of biological molecules
and systems in a test tube through iterative rounds of gene diversifications and library …

Recent trends in biocatalysis

D Yi, T Bayer, CPS Badenhorst, S Wu… - Chemical Society …, 2021 - pubs.rsc.org
Biocatalysis has undergone revolutionary progress in the past century. Benefited by the
integration of multidisciplinary technologies, natural enzymatic reactions are constantly …

Synthetic biology strategies for microbial biosynthesis of plant natural products

A Cravens, J Payne, CD Smolke - Nature communications, 2019 - nature.com
Metabolic engineers endeavor to create a bio-based manufacturing industry using microbes
to produce fuels, chemicals, and medicines. Plant natural products (PNPs) are historically …

Dynamic regulation of metabolic flux in engineered bacteria using a pathway-independent quorum-sensing circuit

A Gupta, IMB Reizman, CR Reisch, KLJ Prather - Nature biotechnology, 2017 - nature.com
Metabolic engineering of microorganisms to produce desirable products on an industrial
scale can result in unbalanced cellular metabolic networks that reduce productivity and …

Genome-wide map** of mutations at single-nucleotide resolution for protein, metabolic and genome engineering

AD Garst, MC Bassalo, G Pines, SA Lynch… - Nature …, 2017 - nature.com
Improvements in DNA synthesis and sequencing have underpinned comprehensive
assessment of gene function in bacteria and eukaryotes. Genome-wide analyses require …

Metabolic engineering of Escherichia coli using CRISPR–Cas9 meditated genome editing

Y Li, Z Lin, C Huang, Y Zhang, Z Wang, Y Tang… - Metabolic …, 2015 - Elsevier
Engineering cellular metabolism for improved production of valuable chemicals requires
extensive modulation of bacterial genome to explore complex genetic spaces. Here, we …

Improvement of a synthetic live bacterial therapeutic for phenylketonuria with biosensor-enabled enzyme engineering

KJ Adolfsen, I Callihan, CE Monahan… - Nature …, 2021 - nature.com
In phenylketonuria (PKU) patients, a genetic defect in the enzyme phenylalanine
hydroxylase (PAH) leads to elevated systemic phenylalanine (Phe), which can result in …

Transcription-factor-based biosensor engineering for applications in synthetic biology

N Ding, S Zhou, Y Deng - ACS Synthetic Biology, 2021 - ACS Publications
Transcription-factor-based biosensors (TFBs) are often used for metabolite detection,
adaptive evolution, and metabolic flux control. However, designing TFBs with superior …

Engineering an allosteric transcription factor to respond to new ligands

ND Taylor, AS Garruss, R Moretti, S Chan, MA Arbing… - Nature …, 2016 - nature.com
Genetic regulatory proteins inducible by small molecules are useful synthetic biology tools
as sensors and switches. Bacterial allosteric transcription factors (aTFs) are a major class of …

A versatile microbial platform as a tunable whole-cell chemical sensor

JM Hernández-Sancho, A Boudigou… - Nature …, 2024 - nature.com
Biosensors are used to detect and quantify chemicals produced in industrial microbiology
with high specificity, sensitivity, and portability. Most biosensors, however, are limited by the …