Spatial proteomics in neurons at single-protein resolution

EM Unterauer, SS Boushehri, K Jevdokimenko… - Cell, 2024 - cell.com
To understand biological processes, it is necessary to reveal the molecular heterogeneity of
cells by gaining access to the location and interaction of all biomolecules. Significant …

OME-Zarr: a cloud-optimized bioimaging file format with international community support

J Moore, D Basurto-Lozada, S Besson… - Histochemistry and Cell …, 2023 - Springer
A growing community is constructing a next-generation file format (NGFF) for bioimaging to
overcome problems of scalability and heterogeneity. Organized by the Open Microscopy …

Neuronal ROS-induced glial lipid droplet formation is altered by loss of Alzheimer's disease–associated genes

MJ Moulton, S Barish, I Ralhan, J Chang… - Proceedings of the …, 2021 - pnas.org
A growing list of Alzheimer's disease (AD) genetic risk factors is being identified, but the
contribution of each variant to disease mechanism remains largely unknown. We have …

[HTML][HTML] TMEM41B is a pan-flavivirus host factor

HH Hoffmann, WM Schneider, K Rozen-Gagnon… - Cell, 2021 - cell.com
Flaviviruses pose a constant threat to human health. These RNA viruses are transmitted by
the bite of infected mosquitoes and ticks and regularly cause outbreaks. To identify host …

Charting the cellular biogeography in colitis reveals fibroblast trajectories and coordinated spatial remodeling

P Cadinu, KN Sivanathan, A Misra, RJ Xu, D Mangani… - Cell, 2024 - cell.com
Gut inflammation involves contributions from immune and non-immune cells, whose
interactions are shaped by the spatial organization of the healthy gut and its remodeling …

Elastic volume reconstruction from series of ultra-thin microscopy sections

S Saalfeld, R Fetter, A Cardona, P Tomancak - Nature methods, 2012 - nature.com
Anatomy of large biological specimens is often reconstructed from serially sectioned
volumes imaged by high-resolution microscopy. We developed a method to reassemble a …

Spatiotemporal coordination of transcription preinitiation complex assembly in live cells

VQ Nguyen, A Ranjan, S Liu, X Tang, YH Ling… - Molecular Cell, 2021 - cell.com
Transcription initiation by RNA polymerase II (RNA Pol II) requires preinitiation complex
(PIC) assembly at gene promoters. In the dynamic nucleus, where thousands of promoters …

Dynamics of RNA localization to nuclear speckles are connected to splicing efficiency

J Wu, Y **ao, Y Liu, L Wen, C **, S Liu, S Paul… - Science …, 2024 - science.org
Nuclear speckles are nuclear membraneless organelles in higher eukaryotic cells playing a
vital role in gene expression. Using an in situ reverse transcription–based sequencing …

An immunohistochemical atlas of necroptotic pathway expression

S Chiou, AH Al-Ani, Y Pan, KM Patel… - EMBO Molecular …, 2024 - embopress.org
Necroptosis is a lytic form of regulated cell death reported to contribute to inflammatory
diseases of the gut, skin and lung, as well as ischemic-reperfusion injuries of the kidney …

[HTML][HTML] Cell-cycle-dependent mRNA localization in P-bodies

A Safieddine, MN Benassy, T Bonte, F Slimani… - Molecular Cell, 2024 - cell.com
Understanding the dynamics of RNA targeting to membraneless organelles is essential to
disentangle their functions. Here, we investigate how P-bodies (PBs) evolve during cell …