Critical evaluation of web-based prediction tools for human protein subcellular localization

Y Shen, Y Ding, J Tang, Q Zou… - Briefings in bioinformatics, 2020 - academic.oup.com
Human protein subcellular localization has an important research value in biological
processes, also in elucidating protein functions and identifying drug targets. Over the past …

[HTML][HTML] Protein subcellular localization prediction tools

M Gillani, G Pollastri - Computational and Structural Biotechnology Journal, 2024 - Elsevier
Protein subcellular localization prediction is of great significance in bioinformatics and
biological research. Most of the proteins do not have experimentally determined localization …

StackPDB: predicting DNA-binding proteins based on XGB-RFE feature optimization and stacked ensemble classifier

Q Zhang, P Liu, X Wang, Y Zhang, Y Han, B Yu - Applied Soft Computing, 2021 - Elsevier
DNA-binding proteins (DBPs) not only play an important role in all aspects of genetic
activities such as DNA replication, recombination, repair, and modification but also are used …

ML-FGAT: Identification of multi-label protein subcellular localization by interpretable graph attention networks and feature-generative adversarial networks

C Wang, Y Wang, P Ding, S Li, X Yu, B Yu - Computers in Biology and …, 2024 - Elsevier
The prediction of multi-label protein subcellular localization (SCL) is a pivotal area in
bioinformatics research. Recent advancements in protein structure research have facilitated …

DEEPStack-RBP: Accurate identification of RNA-binding proteins based on autoencoder feature selection and deep stacking ensemble classifier

Q Wei, Q Zhang, H Gao, T Song, A Salhi… - Knowledge-Based Systems, 2022 - Elsevier
RNA-binding proteins (RBPs) are involved in a number of biological processes such as RNA
synthesis, protein folding, alternative splicing, etc. Predicting RBPs can facilitate the …

DRBPPred-GAT: Accurate prediction of DNA-binding proteins and RNA-binding proteins based on graph multi-head attention network

X Zhang, Y Wang, Q Wei, S He, A Salhi, B Yu - Knowledge-Based Systems, 2024 - Elsevier
DNA-binding proteins (DBPs) and RNA-binding proteins (RBPs) play a crucial role in
regulating various cellular functions that are closely associated with human disease …

Research on predicting early Fusarium head blight with asymptomatic wheat grains by micro-near infrared spectrometer

W Ba, X **, J Lu, Y Rao, T Zhang, XD Zhang… - … Acta Part A: Molecular …, 2023 - Elsevier
Fusarium head blight (FHB) is considered one of the most serious fungal diseases of wheat.
Fusarium resulted in yield losses and contamination of harvested grains with mycotoxins …

ProtDec-LTR3. 0: protein remote homology detection by incorporating profile-based features into learning to rank

B Liu, Y Zhu - Ieee Access, 2019 - ieeexplore.ieee.org
Protein remote homology detection is one of the most challenging problems in the field of
protein sequence analysis, which is an important step for both theoretical research (such as …

Prediction of subcellular location of apoptosis proteins by incorporating PsePSSM and DCCA coefficient based on LFDA dimensionality reduction

B Yu, S Li, W Qiu, M Wang, J Du, Y Zhang, X Chen - BMC genomics, 2018 - Springer
Background Apoptosis is associated with some human diseases, including cancer,
autoimmune disease, neurodegenerative disease and ischemic damage, etc. Apoptosis …

Accurate prediction of multi-label protein subcellular localization through multi-view feature learning with RBRL classifier

Q Zhang, Y Zhang, S Li, Y Han, S **… - Briefings in …, 2021 - academic.oup.com
Multi-label proteins can participate in carrier transportation, enzyme catalysis, hormone
regulation and other life activities. Meanwhile, they play a key role in the fields of …