Handling incomplete heterogeneous data using vaes

A Nazabal, PM Olmos, Z Ghahramani, I Valera - Pattern Recognition, 2020 - Elsevier
Variational autoencoders (VAEs), as well as other generative models, have been shown to
be efficient and accurate for capturing the latent structure of vast amounts of complex high …

Modeling statistical dependencies in multi-region spike train data

SL Keeley, DM Zoltowski, MC Aoi, JW Pillow - Current opinion in …, 2020 - Elsevier
Neural computations underlying cognition and behavior rely on the coordination of neural
activity across multiple brain areas. Understanding how brain areas interact to process …

Biologically informed deep learning to query gene programs in single-cell atlases

M Lotfollahi, S Rybakov, K Hrovatin… - Nature Cell …, 2023 - nature.com
The increasing availability of large-scale single-cell atlases has enabled the detailed
description of cell states. In parallel, advances in deep learning allow rapid analysis of newly …

Interpretable factor models of single-cell RNA-seq via variational autoencoders

V Svensson, A Gayoso, N Yosef, L Pachter - Bioinformatics, 2020 - academic.oup.com
Motivation Single-cell RNA-seq makes possible the investigation of variability in gene
expression among cells, and dependence of variation on cell type. Statistical inference …

Identifiable deep generative models via sparse decoding

GE Moran, D Sridhar, Y Wang, DM Blei - arxiv preprint arxiv:2110.10804, 2021 - arxiv.org
We develop the sparse VAE for unsupervised representation learning on high-dimensional
data. The sparse VAE learns a set of latent factors (representations) which summarize the …

Infogan-cr and modelcentrality: Self-supervised model training and selection for disentangling gans

Z Lin, K Thekumparampil, G Fanti… - … conference on machine …, 2020 - proceedings.mlr.press
Disentangled generative models map a latent code vector to a target space, while enforcing
that a subset of the learned latent codes are interpretable and associated with distinct …

Disentangled representation learning for cross-modal biometric matching

H Ning, X Zheng, X Lu, Y Yuan - IEEE Transactions on …, 2021 - ieeexplore.ieee.org
Cross-modal biometric matching (CMBM) aims to determine the corresponding voice from a
face, or identify the corresponding face from a voice. Recently, many CMBM methods have …

Local Disentanglement in Variational Auto-Encoders Using Jacobian Regularization

T Rhodes, D Lee - Advances in Neural Information …, 2021 - proceedings.neurips.cc
There have been many recent advances in representation learning; however, unsupervised
representation learning can still struggle with model identification issues related to rotations …

SepVAE: a contrastive VAE to separate pathological patterns from healthy ones

R Louiset, E Duchesnay, A Grigis, B Dufumier… - arxiv preprint arxiv …, 2023 - arxiv.org
Contrastive Analysis VAE (CA-VAEs) is a family of Variational auto-encoders (VAEs) that
aims at separating the common factors of variation between a background dataset (BG)(ie …

End-to-end training of deep probabilistic CCA on paired biomedical observations

G Gundersen, B Dumitrascu, JT Ash… - Proceedings of The …, 2020 - oar.princeton.edu
Medical pathology images are visually evaluated by experts for disease diagnosis, but the
connection between image features and the state of the cells in an image is typically …