Bottom-up coarse-graining: Principles and perspectives
Large-scale computational molecular models provide scientists a means to investigate the
effect of microscopic details on emergent mesoscopic behavior. Elucidating the relationship …
effect of microscopic details on emergent mesoscopic behavior. Elucidating the relationship …
[HTML][HTML] Molecular systems with open boundaries: Theory and simulation
Typical experimental setups for molecular systems must deal with a certain coupling to the
external environment, that is, the system is open and exchanges mass, momentum, and …
external environment, that is, the system is open and exchanges mass, momentum, and …
Rotational dynamics of a protein under shear flow studied by the Eckart frame formalism
Proteins are natural polymers that play an essential role in both living organisms and
biotechnological applications. During certain bioprocessing steps, they can be exposed to …
biotechnological applications. During certain bioprocessing steps, they can be exposed to …
From adaptive resolution to molecular dynamics of open systems
We provide an overview of the Adaptive Resolution Simulation method (AdResS) based on
discussing its basic principles and presenting its current numerical and theoretical …
discussing its basic principles and presenting its current numerical and theoretical …
Adaptive resolution molecular dynamics technique: Down to the essential
We investigate the role of the thermodynamic (TD) force as an essential and sufficient
technical ingredient for an efficient and accurate adaptive resolution algorithm. Such a force …
technical ingredient for an efficient and accurate adaptive resolution algorithm. Such a force …
Simulation of a particle domain in a continuum, fluctuating hydrodynamics reservoir
In molecular simulation and fluid mechanics, the coupling of a particle domain with a
continuum representation of its embedding environment is an ongoing challenge. In this …
continuum representation of its embedding environment is an ongoing challenge. In this …
Passing waves from atomistic to continuum
Progress in the development of coupled atomistic–continuum methods for simulations of
critical dynamic material behavior has been hampered by a spurious wave reflection …
critical dynamic material behavior has been hampered by a spurious wave reflection …
Single-layer and double-layer filtration materials based on polyvinylidene fluoride-co-hexafluoropropylene nanofibers coated on melamine microfibers
In this work, we demonstrate selected optimization changes in the simple design of filtration
masks to increase particle removal efficiency (PRE) and filter quality factor by combining …
masks to increase particle removal efficiency (PRE) and filter quality factor by combining …
Open boundary molecular dynamics of sheared star-polymer melts
Open boundary molecular dynamics (OBMD) simulations of a sheared star polymer melt
under isothermal conditions are performed to study the rheology and molecular structure of …
under isothermal conditions are performed to study the rheology and molecular structure of …
Multiscale simulation of fluids: coupling molecular and continuum
Computer simulation is an important tool for scientific progress, especially when lab
experiments are either extremely costly and difficult or lack the required resolution. However …
experiments are either extremely costly and difficult or lack the required resolution. However …