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Graphics processing units in bioinformatics, computational biology and systems biology
Abstract Several studies in Bioinformatics, Computational Biology and Systems Biology rely
on the definition of physico-chemical or mathematical models of biological systems at …
on the definition of physico-chemical or mathematical models of biological systems at …
An analysis of system balance and architectural trends based on top500 supercomputers
Supercomputer design is a complex, multi-dimensional optimization process, wherein
several subsystems need to be reconciled to meet a desired figure of merit performance for …
several subsystems need to be reconciled to meet a desired figure of merit performance for …
Accelerating hydrocodes with OpenACC, OpenCL and CUDA
JA Herdman, WP Gaudin… - 2012 SC Companion …, 2012 - ieeexplore.ieee.org
Hardware accelerators such as GPGPUs are becoming increasingly common in HPC
platforms and their use is widely recognised as being one of the most promising approaches …
platforms and their use is widely recognised as being one of the most promising approaches …
[PDF][PDF] Cloverleaf: Preparing hydrodynamics codes for exascale
A Mallinson, DA Beckingsale, W Gaudin, J Herdman… - The Cray User …, 2013 - cug.org
▪ The C bindings make interfacing with Fortran difficult▪ Global class implemented to
coordinate data transfers with and computation on the GPU▪ Data created and initialised on …
coordinate data transfers with and computation on the GPU▪ Data created and initialised on …
Best practices and lessons learned from deploying and operating large-scale data-centric parallel file systems
S Oral, J Simmons, J Hill, D Leverman… - SC'14: Proceedings …, 2014 - ieeexplore.ieee.org
The Oak Ridge Leadership Computing Facility (OLCF) has deployed multiple large-scale
parallel file systems (PFS) to support its operations. During this process, OLCF acquired …
parallel file systems (PFS) to support its operations. During this process, OLCF acquired …
Pre-exascale accelerated application development: The ORNL Summit experience
High-performance computing (HPC) increasingly relies on heterogeneous architectures to
achieve higher performance. In the Oak Ridge Leadership Facility (OLCF), Oak Ridge, TN …
achieve higher performance. In the Oak Ridge Leadership Facility (OLCF), Oak Ridge, TN …
Learning from five-year resource-utilization data of titan system
Titan was the flagship supercomputer at the Oak Ridge Leadership Computing Facility
(OLCF). It was deployed in late 2012, became the fastest supercomputer in the world and …
(OLCF). It was deployed in late 2012, became the fastest supercomputer in the world and …
Direct-fuse: Removing the middleman for high-performance fuse file system support
Develo** a file system is a challenging task, especially a kernel-level file system. User-
level file systems alleviate the burden and development complexity associated with kernel …
level file systems alleviate the burden and development complexity associated with kernel …
[PDF][PDF] OLCF's 1 TB/s, next-generation lustre file system
Abstract The Oak Ridge Leadership Computing Facility (OLCF) at Oak Ridge National
Laboratory (ORNL) has a long history of deploying the world's fastest supercomputers to …
Laboratory (ORNL) has a long history of deploying the world's fastest supercomputers to …
Comparative I/O workload characterization of two leadership class storage clusters
R Gunasekaran, S Oral, J Hill, R Miller… - Proceedings of the 10th …, 2015 - dl.acm.org
The Oak Ridge Leadership Computing Facility (OLCF) is a leader in large-scale parallel file
system development, design, deployment and continuous operation. For the last decade, the …
system development, design, deployment and continuous operation. For the last decade, the …