NCBI Taxonomy: a comprehensive update on curation, resources and tools
Abstract The National Center for Biotechnology Information (NCBI) Taxonomy includes
organism names and classifications for every sequence in the nucleotide and protein …
organism names and classifications for every sequence in the nucleotide and protein …
The new tree of eukaryotes
For 15 years, the eukaryote Tree of Life (eToL) has been divided into five to eight major
grou**s, known as 'supergroups'. However, the tree has been profoundly rearranged …
grou**s, known as 'supergroups'. However, the tree has been profoundly rearranged …
The SILVA and “all-species living tree project (LTP)” taxonomic frameworks
SILVA (from Latin silva, forest, http://www. arb-silva. de) is a comprehensive resource for up-
to-date quality-controlled databases of aligned ribosomal RNA (rRNA) gene sequences from …
to-date quality-controlled databases of aligned ribosomal RNA (rRNA) gene sequences from …
Revisions to the classification, nomenclature, and diversity of eukaryotes
This revision of the classification of eukaryotes follows that of Adl et al., 2012 [J. Euk.
Microbiol. 59 (5)] and retains an emphasis on protists. Changes since have improved the …
Microbiol. 59 (5)] and retains an emphasis on protists. Changes since have improved the …
Global diversity and geography of soil fungi
Introduction The kingdom Fungi is one of the most diverse groups of organisms on Earth,
and they are integral ecosystem agents that govern soil carbon cycling, plant nutrition, and …
and they are integral ecosystem agents that govern soil carbon cycling, plant nutrition, and …
Low shifts in salinity determined assembly processes and network stability of microeukaryotic plankton communities in a subtropical urban reservoir
Background Freshwater salinization may result in significant changes of microbial
community composition and diversity, with implications for ecosystem processes and …
community composition and diversity, with implications for ecosystem processes and …
Microalgae for high-value products towards human health and nutrition
Microalgae represent a potential source of renewable nutrition and there is growing interest
in algae-based dietary supplements in the form of whole biomass, eg, Chlorella and …
in algae-based dietary supplements in the form of whole biomass, eg, Chlorella and …
The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy
The interrogation of genetic markers in environmental meta-barcoding studies is currently
seriously hindered by the lack of taxonomically curated reference data sets for the targeted …
seriously hindered by the lack of taxonomically curated reference data sets for the targeted …
High-level classification of the Fungi and a tool for evolutionary ecological analyses
High-throughput sequencing studies generate vast amounts of taxonomic data. Evolutionary
ecological hypotheses of the recovered taxa and Species Hypotheses are difficult to test due …
ecological hypotheses of the recovered taxa and Species Hypotheses are difficult to test due …
Fungal diversity notes 1036–1150: taxonomic and phylogenetic contributions on genera and species of fungal taxa
This article is the tenth series of the Fungal Diversity Notes, where 114 taxa distributed in
three phyla, ten classes, 30 orders and 53 families are described and illustrated. Taxa …
three phyla, ten classes, 30 orders and 53 families are described and illustrated. Taxa …