[HTML][HTML] Designing future crops: genomics-assisted breeding comes of age

RK Varshney, A Bohra, J Yu, A Graner, Q Zhang… - Trends in plant …, 2021 - cell.com
Over the past decade, genomics-assisted breeding (GAB) has been instrumental in
harnessing the potential of modern genome resources and characterizing and exploiting …

Translating high-throughput phenoty** into genetic gain

JL Araus, SC Kefauver, M Zaman-Allah, MS Olsen… - Trends in plant …, 2018 - cell.com
Inability to efficiently implement high-throughput field phenoty** is increasingly perceived
as a key component that limits genetic gain in breeding programs. Field phenoty** must …

Two teosintes made modern maize

N Yang, Y Wang, X Liu, M **, M Vallebueno-Estrada… - Science, 2023 - science.org
The origins of maize were the topic of vigorous debate for nearly a century, but neither the
current genetic model nor earlier archaeological models account for the totality of available …

Genomic basis of geographical adaptation to soil nitrogen in rice

Y Liu, H Wang, Z Jiang, W Wang, R Xu, Q Wang… - Nature, 2021 - nature.com
The intensive application of inorganic nitrogen underlies marked increases in crop
production, but imposes detrimental effects on ecosystems,: it is therefore crucial for future …

Seedling root system adaptation to water availability during maize domestication and global expansion

P Yu, C Li, M Li, X He, D Wang, H Li, C Marcon, Y Li… - Nature …, 2024 - nature.com
The maize root system has been reshaped by indirect selection during global adaptation to
new agricultural environments. In this study, we characterized the root systems of more than …

A pan-genomic approach to genome databases using maize as a model system

MR Woodhouse, EK Cannon, JL Portwood, LC Harper… - BMC plant biology, 2021 - Springer
Research in the past decade has demonstrated that a single reference genome is not
representative of a species' diversity. MaizeGDB introduces a pan-genomic approach to …

Pan-genome analysis highlights the extent of genomic variation in cultivated and wild rice

Q Zhao, Q Feng, H Lu, Y Li, A Wang, Q Tian, Q Zhan… - Nature …, 2018 - nature.com
The rich genetic diversity in Oryza sativa and Oryza rufipogon serves as the main sources in
rice breeding. Large-scale resequencing has been undertaken to discover allelic variants in …

BLINK: a package for the next level of genome-wide association studies with both individuals and markers in the millions

M Huang, X Liu, Y Zhou, RM Summers, Z Zhang - Gigascience, 2019 - academic.oup.com
Big datasets, accumulated from biomedical and agronomic studies, provide the potential to
identify genes that control complex human diseases and agriculturally important traits …

Submergence and waterlogging stress in plants: a review highlighting research opportunities and understudied aspects

T Fukao, BE Barrera-Figueroa, P Juntawong… - Frontiers in Plant …, 2019 - frontiersin.org
Soil flooding creates composite and complex stress in plants known as either submergence
or waterlogging stress depending on the depth of the water table. In nature, these stresses …

Resequencing of 429 chickpea accessions from 45 countries provides insights into genome diversity, domestication and agronomic traits

RK Varshney, M Thudi, M Roorkiwal, W He… - Nature …, 2019 - nature.com
We report a map of 4.97 million single-nucleotide polymorphisms of the chickpea from whole-
genome resequencing of 429 lines sampled from 45 countries. We identified 122 candidate …