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[HTML][HTML] Designing future crops: genomics-assisted breeding comes of age
Over the past decade, genomics-assisted breeding (GAB) has been instrumental in
harnessing the potential of modern genome resources and characterizing and exploiting …
harnessing the potential of modern genome resources and characterizing and exploiting …
Translating high-throughput phenoty** into genetic gain
Inability to efficiently implement high-throughput field phenoty** is increasingly perceived
as a key component that limits genetic gain in breeding programs. Field phenoty** must …
as a key component that limits genetic gain in breeding programs. Field phenoty** must …
Two teosintes made modern maize
The origins of maize were the topic of vigorous debate for nearly a century, but neither the
current genetic model nor earlier archaeological models account for the totality of available …
current genetic model nor earlier archaeological models account for the totality of available …
Genomic basis of geographical adaptation to soil nitrogen in rice
The intensive application of inorganic nitrogen underlies marked increases in crop
production, but imposes detrimental effects on ecosystems,: it is therefore crucial for future …
production, but imposes detrimental effects on ecosystems,: it is therefore crucial for future …
Seedling root system adaptation to water availability during maize domestication and global expansion
The maize root system has been reshaped by indirect selection during global adaptation to
new agricultural environments. In this study, we characterized the root systems of more than …
new agricultural environments. In this study, we characterized the root systems of more than …
A pan-genomic approach to genome databases using maize as a model system
MR Woodhouse, EK Cannon, JL Portwood, LC Harper… - BMC plant biology, 2021 - Springer
Research in the past decade has demonstrated that a single reference genome is not
representative of a species' diversity. MaizeGDB introduces a pan-genomic approach to …
representative of a species' diversity. MaizeGDB introduces a pan-genomic approach to …
Pan-genome analysis highlights the extent of genomic variation in cultivated and wild rice
Q Zhao, Q Feng, H Lu, Y Li, A Wang, Q Tian, Q Zhan… - Nature …, 2018 - nature.com
The rich genetic diversity in Oryza sativa and Oryza rufipogon serves as the main sources in
rice breeding. Large-scale resequencing has been undertaken to discover allelic variants in …
rice breeding. Large-scale resequencing has been undertaken to discover allelic variants in …
BLINK: a package for the next level of genome-wide association studies with both individuals and markers in the millions
Big datasets, accumulated from biomedical and agronomic studies, provide the potential to
identify genes that control complex human diseases and agriculturally important traits …
identify genes that control complex human diseases and agriculturally important traits …
Submergence and waterlogging stress in plants: a review highlighting research opportunities and understudied aspects
Soil flooding creates composite and complex stress in plants known as either submergence
or waterlogging stress depending on the depth of the water table. In nature, these stresses …
or waterlogging stress depending on the depth of the water table. In nature, these stresses …
Resequencing of 429 chickpea accessions from 45 countries provides insights into genome diversity, domestication and agronomic traits
We report a map of 4.97 million single-nucleotide polymorphisms of the chickpea from whole-
genome resequencing of 429 lines sampled from 45 countries. We identified 122 candidate …
genome resequencing of 429 lines sampled from 45 countries. We identified 122 candidate …