A review of deep learning applications for genomic selection

OA Montesinos-López, A Montesinos-López… - BMC genomics, 2021 - Springer
Abstract Background Several conventional genomic Bayesian (or no Bayesian) prediction
methods have been proposed including the standard additive genetic effect model for which …

[HTML][HTML] Machine learning approaches for crop improvement: Leveraging phenotypic and genotypic big data

H Tong, Z Nikoloski - Journal of plant physiology, 2021 - Elsevier
Highly efficient and accurate selection of elite genotypes can lead to dramatic shortening of
the breeding cycle in major crops relevant for sustaining present demands for food, feed …

Applications of deep learning in understanding gene regulation

Z Li, E Gao, J Zhou, W Han, X Xu, X Gao - Cell Reports Methods, 2023 - cell.com
Gene regulation is a central topic in cell biology. Advances in omics technologies and the
accumulation of omics data have provided better opportunities for gene regulation studies …

Prunus genetics and applications after de novo genome sequencing: achievements and prospects

MJ Aranzana, V Decroocq, E Dirlewanger… - Horticulture …, 2019 - academic.oup.com
Prior to the availability of whole-genome sequences, our understanding of the structural and
functional aspects of Prunus tree genomes was limited mostly to molecular genetic map** …

Accelerating genetic gain in sugarcane breeding using genomic selection

S Yadav, P Jackson, X Wei, EM Ross, K Aitken… - Agronomy, 2020 - mdpi.com
Sugarcane is a major industrial crop cultivated in tropical and subtropical regions of the
world. It is the primary source of sugar worldwide, accounting for more than 70% of world …

Exploring deep learning for complex trait genomic prediction in polyploid outcrossing species

LM Zingaretti, SA Gezan, LFV Ferrão… - Frontiers in plant …, 2020 - frontiersin.org
Genomic prediction (GP) is the procedure whereby the genetic merits of untested candidates
are predicted using genome wide marker information. Although numerous examples of GP …

Development and applications of a high throughput genoty** tool for polyploid crops: single nucleotide polymorphism (SNP) array

Q You, X Yang, Z Peng, L Xu, J Wang - Frontiers in Plant Science, 2018 - frontiersin.org
Polypoid species play significant roles in agriculture and food production. Many crop
species are polyploid, such as potato, wheat, strawberry, and sugarcane. Genoty** has …

Deciphering the genetic architecture of fruit color in strawberry

B Denoyes, A Prohaska, J Petit… - Journal of Experimental …, 2023 - academic.oup.com
Fruits of Fragaria species usually have an appealing bright red color due to the
accumulation of anthocyanins, water-soluble flavonoid pigments. Octoploid cultivated …

A roadmap for research in octoploid strawberry

VM Whitaker, SJ Knapp, MA Hardigan… - Horticulture …, 2020 - academic.oup.com
The cultivated strawberry (Fragaria× ananassa) is an allo-octoploid species, originating
nearly 300 years ago from wild progenitors from the Americas. Since that time the strawberry …

[HTML][HTML] Harness the power of genomic selection and the potential of germplasm in crop breeding for global food security in the era with rapid climate change

T He, C Li - The Crop Journal, 2020 - Elsevier
Crop genetic improvements catalysed population growth, which in turn has increased the
pressure for food security. We need to produce 70% more food to meet the demands of 9.5 …