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Advancing microbial sciences by individual-based modelling
Remarkable technological advances have revealed ever more properties and behaviours of
individual microorganisms, but the novel data generated by these techniques have not yet …
individual microorganisms, but the novel data generated by these techniques have not yet …
Accounting for soil architecture and microbial dynamics in microscale models: Current practices in soil science and the path ahead
Macroscopic models of soil organic matter (SOM) turnover have faced difficulties in
reproducing SOM dynamics or in predicting the spatial distribution of carbon stocks. These …
reproducing SOM dynamics or in predicting the spatial distribution of carbon stocks. These …
A perspective on applied geochemistry in porous media: Reactive transport modeling of geochemical dynamics and the interplay with flow phenomena and physical …
In many practical geochemical systems that are at the center of providing indispensable
energy, resources and service to our society,(bio) geochemical reactions are coupled with …
energy, resources and service to our society,(bio) geochemical reactions are coupled with …
Modeling microbial growth and dynamics
DS Esser, JHJ Leveau, KM Meyer - Applied microbiology and …, 2015 - Springer
Modeling has become an important tool for widening our understanding of microbial growth
in the context of applied microbiology and related to such processes as safe food …
in the context of applied microbiology and related to such processes as safe food …
Understanding the joint impacts of soil architecture and microbial dynamics on soil functions: Insights derived from microscale models
Over the last decades, a new generation of microscale models has been developed to
simulate soil microbial activity. An earlier article (Pot et al., 2021) presented a detailed …
simulate soil microbial activity. An earlier article (Pot et al., 2021) presented a detailed …
Mycelia as a focal point for horizontal gene transfer among soil bacteria
T Berthold, F Centler, T Hübschmann, R Remer… - Scientific reports, 2016 - nature.com
Horizontal gene transfer (HGT) is a main mechanism of bacterial evolution endowing
bacteria with new genetic traits. The transfer of mobile genetic elements such as plasmids …
bacteria with new genetic traits. The transfer of mobile genetic elements such as plasmids …
Microbial controls on the biogeochemical dynamics in the subsurface
Biogeochemical processes are of tremendous importance for determining the fate of many
organic and inorganic compounds in the subsurface. Most global elemental cycles involve …
organic and inorganic compounds in the subsurface. Most global elemental cycles involve …
Chemotactic droplet swimmers in complex geometries
Chemotaxis 1 and auto-chemotaxis are key mechanisms in the dynamics of micro-
organisms, eg in the acquisition of nutrients and in the communication between individuals …
organisms, eg in the acquisition of nutrients and in the communication between individuals …
[HTML][HTML] Exact minimum speed of traveling waves in a Keller–Segel model
JJ Bramburger - Applied Mathematics Letters, 2021 - Elsevier
In this letter we present a Keller–Segel model with logistic growth dynamics arising in the
study of chemotactic pattern formation. We prove the existence of a minimum wave speed for …
study of chemotactic pattern formation. We prove the existence of a minimum wave speed for …
Kinetics of substrate biodegradation under the cumulative effects of bioavailability and self-inhibition
Microbial degradation is an important process in many environments controlling for instance
the cycling of nutrients or the biodegradation of contaminants. At high substrate …
the cycling of nutrients or the biodegradation of contaminants. At high substrate …