Transcription factor enrichment analysis (TFEA) quantifies the activity of multiple transcription factors from a single experiment

JD Rubin, JT Stanley, RF Sigauke… - Communications …, 2021 - nature.com
Detecting changes in the activity of a transcription factor (TF) in response to a perturbation
provides insights into the underlying cellular process. Transcription Factor Enrichment …

[HTML][HTML] Comprehensive guide for epigenetics and transcriptomics data quality control

A Comendul, F Ruf-Zamojski, CT Ford, P Agarwal… - STAR protocols, 2025 - Elsevier
Host response to environmental exposures such as pathogens and chemicals can include
modifications to the epigenome and transcriptome. Improved signature discovery, including …

[PDF][PDF] The Identification of Transcriptionally Active Regions

D Miller - umm-csci.github.io
Current methods for identifying transcriptionally active regions are expensive, arduous, and
require large portions of cells. Another issue is their inefficiency in distinguishing individual …