A survey of drug-target interaction and affinity prediction methods via graph neural networks

Y Zhang, Y Hu, N Han, A Yang, X Liu, H Cai - Computers in Biology and …, 2023 - Elsevier
The tasks of drug-target interaction (DTI) and drug-target affinity (DTA) prediction play
important roles in the field of drug discovery. However, biological experiment-based …

Revolutionizing adjuvant development: harnessing AI for next-generation cancer vaccines

WY Zhang, XL Zheng, PS Coghi, JH Chen… - Frontiers in …, 2024 - frontiersin.org
With the COVID-19 pandemic, the importance of vaccines has been widely recognized and
has led to increased research and development efforts. Vaccines also play a crucial role in …

Variational gated autoencoder-based feature extraction model for inferring disease-miRNA associations based on multiview features

Y Guo, D Zhou, X Ruan, J Cao - Neural Networks, 2023 - Elsevier
MicroRNAs (miRNA) play critical roles in diverse biological processes of diseases. Inferring
potential disease-miRNA associations enable us to better understand the development and …

AttentionMGT-DTA: A multi-modal drug-target affinity prediction using graph transformer and attention mechanism

H Wu, J Liu, T Jiang, Q Zou, S Qi, Z Cui, P Tiwari… - Neural Networks, 2024 - Elsevier
The accurate prediction of drug-target affinity (DTA) is a crucial step in drug discovery and
design. Traditional experiments are very expensive and time-consuming. Recently, deep …

REDDA: Integrating multiple biological relations to heterogeneous graph neural network for drug-disease association prediction

Y Gu, S Zheng, Q Yin, R Jiang, J Li - Computers in biology and medicine, 2022 - Elsevier
Computational drug repositioning is an effective way to find new indications for existing
drugs, thus can accelerate drug development and reduce experimental costs. Recently …

Hierarchical graph representation learning for the prediction of drug-target binding affinity

Z Chu, F Huang, H Fu, Y Quan, X Zhou, S Liu… - Information …, 2022 - Elsevier
Computationally predicting drug-target binding affinity (DTA) has attracted increasing
attention due to its benefit for accelerating drug discovery. Currently, numerous deep …

The changing scenario of drug discovery using AI to deep learning: Recent advancement, success stories, collaborations, and challenges

C Chakraborty, M Bhattacharya, SS Lee… - Molecular Therapy …, 2024 - pmc.ncbi.nlm.nih.gov
Due to the transformation of artificial intelligence (AI) tools and technologies, AI-driven drug
discovery has come to the forefront. It reduces the time and expenditure. Due to these …

The changing scenario of drug discovery using artificial intelligence (AI) to deep learning (DL): Recent advancement, success stories, collaborations, and challenges

C Chakraborty, M Bhattacharya, SS Lee… - … Therapy-Nucleic Acids, 2024 - cell.com
Due to the transformation of artificial intelligence (AI) tools and technologies, AI-driven drug
discovery has come to the forefront. It reduces the time and expenditure. Due to these …

TransVAE-DTA: Transformer and variational autoencoder network for drug-target binding affinity prediction

C Zhou, Z Li, J Song, W **ang - Computer Methods and Programs in …, 2024 - Elsevier
Background and objective Recent studies have emphasized the significance of
computational in silico drug-target binding affinity (DTA) prediction in the field of drug …

[HTML][HTML] Therapeutic potential of snake venom: Toxin distribution and opportunities in deep learning for novel drug discovery

A Bedraoui, M Suntravat, S El Mejjad, S Enezari… - Medicine in Drug …, 2024 - Elsevier
Snake venom is a rich source of bioactive molecules that hold great promise for therapeutic
applications. These molecules can be broadly classified into enzymes and non-enzymes …