Top-down proteomics

DS Roberts, JA Loo, YO Tsybin, X Liu, S Wu… - Nature Reviews …, 2024 - nature.com
Proteoforms, which arise from post-translational modifications, genetic polymorphisms and
RNA splice variants, play a pivotal role as drivers in biology. Understanding proteoforms is …

Best practices and benchmarks for intact protein analysis for top-down mass spectrometry

DP Donnelly, CM Rawlins, CJ DeHart, L Fornelli… - Nature …, 2019 - nature.com
One gene can give rise to many functionally distinct proteoforms, each of which has a
characteristic molecular mass. Top-down mass spectrometry enables the analysis of intact …

The Blood Proteoform Atlas: A reference map of proteoforms in human hematopoietic cells

RD Melani, VR Gerbasi, LC Anderson, JW Sikora… - Science, 2022 - science.org
Human biology is tightly linked to proteins, yet most measurements do not precisely
determine alternatively spliced sequences or posttranslational modifications. Here, we …

Progress in top-down proteomics and the analysis of proteoforms

TK Toby, L Fornelli, NL Kelleher - Annual review of analytical …, 2016 - annualreviews.org
From a molecular perspective, enactors of function in biology are intact proteins that can be
variably modified at the genetic, transcriptional, or post-translational level. Over the past 30 …

Identification and quantification of proteoforms by mass spectrometry

LV Schaffer, RJ Millikin, RM Miller, LC Anderson… - …, 2019 - Wiley Online Library
A proteoform is a defined form of a protein derived from a given gene with a specific amino
acid sequence and localized post‐translational modifications. In top‐down proteomic …

Quantitative proteomic analysis of histone modifications

H Huang, S Lin, BA Garcia, Y Zhao - Chemical reviews, 2015 - ACS Publications
Several mechanisms have been proposed for histone marks to exert their functions,
including altering the physical properties of nucleosomes by neutralization of charge via …

Multiplexed mass spectrometry of individual ions improves measurement of proteoforms and their complexes

JO Kafader, RD Melani, KR Durbin, B Ikwuagwu… - Nature …, 2020 - nature.com
An Orbitrap-based ion analysis procedure determines the direct charge for numerous
individual protein ions to generate true mass spectra. This individual ion mass spectrometry …

Top-down proteomics: ready for prime time?

B Chen, KA Brown, Z Lin, Y Ge - Analytical chemistry, 2017 - ACS Publications
Beyond the genetic code, the human proteome is greatly diversified by genetic variations,
alternative splicing of RNA transcripts, and post-translational modifications (PTMs). 6, 7 In …

High-throughput quantitative top-down proteomics

KA Cupp-Sutton, S Wu - Molecular omics, 2020 - pubs.rsc.org
Top-down mass spectrometry (MS) analyzes intact proteins at the proteoform level, which
allows researchers to better understand the functions of protein modifications. Recently, top …

Diversity of amyloid-beta proteoforms in the Alzheimer's disease brain

NC Wildburger, TJ Esparza, RD LeDuc, RT Fellers… - Scientific reports, 2017 - nature.com
Amyloid-beta (Aβ) plays a key role in the pathogenesis of Alzheimer's disease (AD), but little
is known about the proteoforms present in AD brain. We used high-resolution mass …