A field guide to eukaryotic transposable elements

JN Wells, C Feschotte - Annual review of genetics, 2020 - annualreviews.org
Transposable elements (TEs) are mobile DNA sequences that propagate within genomes.
Through diverse invasion strategies, TEs have come to occupy a substantial fraction of …

Transposons: the agents of antibiotic resistance in bacteria

S Babakhani, M Oloomi - Journal of basic microbiology, 2018 - Wiley Online Library
Transposons are a group of mobile genetic elements that are defined as a DNA sequence.
Transposons can jump into different places of the genome; for this reason, they are called …

Repbase Update, a database of repetitive elements in eukaryotic genomes

W Bao, KK Kojima, O Kohany - Mobile Dna, 2015 - Springer
Repbase Update (RU) is a database of representative repeat sequences in eukaryotic
genomes. Since its first development as a database of human repetitive sequences in 1992 …

Transposable elements, epigenetics, and genome evolution

NV Fedoroff - Science, 2012 - science.org
2012 still-prevalent view that every bit of an organism's DNA has a specific function crafted
by selection. Thus, both papers promoted Dawkins' concept of “selfish DNA”—the notion that …

Finding the missing honey bee genes: lessons learned from a genome upgrade

CG Elsik, KC Worley, AK Bennett, M Beye, F Camara… - BMC genomics, 2014 - Springer
Background The first generation of genome sequence assemblies and annotations have
had a significant impact upon our understanding of the biology of the sequenced species …

Genomic signatures of evolutionary transitions from solitary to group living

KM Kapheim, H Pan, C Li, SL Salzberg, D Puiu… - Science, 2015 - science.org
The evolution of eusociality is one of the major transitions in evolution, but the underlying
genomic changes are unknown. We compared the genomes of 10 bee species that vary in …

Contemporary Transposon Tools: A Review and Guide through Mechanisms and Applications of Slee** Beauty, piggyBac and Tol2 for Genome Engineering

N Sandoval-Villegas, W Nurieva, M Amberger… - International journal of …, 2021 - mdpi.com
Transposons are mobile genetic elements evolved to execute highly efficient integration of
their genes into the genomes of their host cells. These natural DNA transfer vehicles have …

Recurrent evolution of vertebrate transcription factors by transposase capture

RL Cosby, J Judd, R Zhang, A Zhong, N Garry… - Science, 2021 - science.org
INTRODUCTION How novel protein architectures evolve remains poorly understood. The
rearrangement of domains with preexisting functions into new composite architectures …

Subgenome dominance in an interspecific hybrid, synthetic allopolyploid, and a 140-year-old naturally established neo-allopolyploid monkeyflower

PP Edger, R Smith, MR McKain, AM Cooley… - The Plant …, 2017 - academic.oup.com
Recent studies have shown that one of the parental subgenomes in ancient polyploids is
generally more dominant, having retained more genes and being more highly expressed, a …

Gene-rich UV sex chromosomes harbor conserved regulators of sexual development

SB Carey, J Jenkins, JT Lovell, F Maumus… - Science …, 2021 - science.org
Nonrecombining sex chromosomes, like the mammalian Y, often lose genes and
accumulate transposable elements, a process termed degeneration. The correlation …