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Red macroalgae in the genomic era
Rhodophyta (or red algae) are a diverse and species‐rich group that forms one of three
major lineages in the Archaeplastida, a eukaryotic supergroup whose plastids arose from a …
major lineages in the Archaeplastida, a eukaryotic supergroup whose plastids arose from a …
A comprehensive review of scaffolding methods in genome assembly
J Luo, Y Wei, M Lyu, Z Wu, X Liu, H Luo… - Briefings in …, 2021 - academic.oup.com
In the field of genome assembly, scaffolding methods make it possible to obtain a more
complete and contiguous reference genome, which is the cornerstone of genomic research …
complete and contiguous reference genome, which is the cornerstone of genomic research …
Chromosome-level genome assembly reveals homologous chromosomes and recombination in asexual rotifer Adineta vaga
Bdelloid rotifers are notorious as a speciose ancient clade comprising only asexual
lineages. Thanks to their ability to repair highly fragmented DNA, most bdelloid species also …
lineages. Thanks to their ability to repair highly fragmented DNA, most bdelloid species also …
Chromosomal scale assembly of parasitic wasp genome reveals symbiotic virus colonization
Endogenous viruses form an important proportion of eukaryote genomes and a source of
novel functions. How large DNA viruses integrated into a genome evolve when they confer a …
novel functions. How large DNA viruses integrated into a genome evolve when they confer a …
Range-wide differential adaptation and genomic offset in critically endangered Asian rosewoods
TH Hung, T So, B Thammavong… - Proceedings of the …, 2023 - pnas.org
In the billion-dollar global illegal wildlife trade, rosewoods have been the world's most
trafficked wild product since 2005. Dalbergia cochinchinensis and Dalbergia oliveri are the …
trafficked wild product since 2005. Dalbergia cochinchinensis and Dalbergia oliveri are the …
Comparative analysis of the Mercenaria mercenaria genome provides insights into the diversity of transposable elements and immune molecules in bivalve mollusks
S Farhat, E Bonnivard, E Pales Espinosa, A Tanguy… - BMC genomics, 2022 - Springer
Abstract Background The hard clam Mercenaria mercenaria is a major marine resource
along the Atlantic coasts of North America and has been introduced to other continents for …
along the Atlantic coasts of North America and has been introduced to other continents for …
A deep learning-based method enables the automatic and accurate assembly of chromosome-level genomes
Z Jiang, Z Peng, Z Wei, J Sun, Y Luo, L Bie… - Nucleic Acids …, 2024 - academic.oup.com
The application of high-throughput chromosome conformation capture (Hi-C) technology
enables the construction of chromosome-level assemblies. However, the correction of errors …
enables the construction of chromosome-level assemblies. However, the correction of errors …
Orchestrating chromosome conformation capture analysis with Bioconductor
Genome-wide chromatin conformation capture assays provide formidable insights into the
spatial organization of genomes. However, due to the complexity of the data structure, their …
spatial organization of genomes. However, due to the complexity of the data structure, their …
The genome of the reef-building glass sponge Aphrocallistes vastus provides insights into silica biomineralization
Well-annotated and contiguous genomes are an indispensable resource for understanding
the evolution, development, and metabolic capacities of organisms. Sponges, an …
the evolution, development, and metabolic capacities of organisms. Sponges, an …
The brown seaweed Ectocarpus
SM Coelho - 2024 - nature.com
Brown seaweeds are multicellular eukaryotes that have been evolving independently of
animals and plants for more than a billion years. The filamentous brown alga Ectocarpus …
animals and plants for more than a billion years. The filamentous brown alga Ectocarpus …