Genome sequences of horticultural plants: past, present, and future

F Chen, Y Song, X Li, J Chen, L Mo, X Zhang… - Horticulture …, 2019 - academic.oup.com
Horticultural plants play various and critical roles for humans by providing fruits, vegetables,
materials for beverages, and herbal medicines and by acting as ornamentals. They have …

Latent postharvest pathogens of pome fruit and their management: From single measures to a systems intervention approach

M Wenneker, BPHJ Thomma - European Journal of Plant Pathology, 2020 - Springer
Postharvest diseases of pome fruit are typically caused by a wide diversity of fungal
pathogens, and the list of confirmed causal agents is still growing. There is considerable …

Gene duplication and evolution in recurring polyploidization–diploidization cycles in plants

X Qiao, Q Li, H Yin, K Qi, L Li, R Wang, S Zhang… - Genome biology, 2019 - Springer
Background The sharp increase of plant genome and transcriptome data provide valuable
resources to investigate evolutionary consequences of gene duplication in a range of taxa …

A high-quality apple genome assembly reveals the association of a retrotransposon and red fruit colour

L Zhang, J Hu, X Han, J Li, Y Gao, CM Richards… - Nature …, 2019 - nature.com
A complete and accurate genome sequence provides a fundamental tool for functional
genomics and DNA-informed breeding. Here, we assemble a high-quality genome (contig …

15 years of GDR: New data and functionality in the Genome Database for Rosaceae

S Jung, T Lee, CH Cheng, K Buble… - Nucleic acids …, 2019 - academic.oup.com
Abstract The Genome Database for Rosaceae (GDR, https://www. rosaceae. org) is an
integrated web-based community database resource providing access to publicly available …

BBX16, a B‐box protein, positively regulates light‐induced anthocyanin accumulation by activating MYB10 in red pear

S Bai, R Tao, Y Tang, L Yin, Y Ma, J Ni… - Plant Biotechnology …, 2019 - Wiley Online Library
The red coloration of pear (Pyrus pyrifolia) results from anthocyanin accumulation in the fruit
peel. Light is required for anthocyanin biosynthesis in pear. A pear homolog of Arabidopsis …

Efficient targeted mutagenesis in apple and first time edition of pear using the CRISPR-Cas9 system

A Charrier, E Vergne, N Dousset, A Richer… - Frontiers in Plant …, 2019 - frontiersin.org
Targeted genome engineering has emerged as an alternative to classical plant breeding
and transgenic methods to improve crop plants. Among other methods (zinc finger …

The genome sequence of sweet cherry (Prunus avium) for use in genomics-assisted breeding

K Shirasawa, K Isuzugawa, M Ikenaga, Y Saito… - DNA …, 2017 - academic.oup.com
We determined the genome sequence of sweet cherry (Prunus avium) using next-
generation sequencing technology. The total length of the assembled sequences was 272.4 …

Diversification and independent domestication of Asian and European pears

J Wu, Y Wang, J Xu, SS Korban, Z Fei, S Tao, R Ming… - Genome Biology, 2018 - Springer
Abstract Background Pear (Pyrus) is a globally grown fruit, with thousands of cultivars in five
domesticated species and dozens of wild species. However, little is known about the …

A manually annotated Actinidia chinensis var. chinensis (kiwifruit) genome highlights the challenges associated with draft genomes and gene prediction in plants

SM Pilkington, R Crowhurst, E Hilario, S Nardozza… - BMC genomics, 2018 - Springer
Background Most published genome sequences are drafts, and most are dominated by
computational gene prediction. Draft genomes typically incorporate considerable sequence …