Physical non-equilibria for prebiotic nucleic acid chemistry

A Ianeselli, A Salditt, C Mast, B Ercolano… - Nature Reviews …, 2023 - nature.com
The prebiotic replication of DNA and RNA is a complex interplay between chemistry and the
environment. Factors that have direct and indirect effects on prebiotic chemistry include …

The photophysics of nucleic acids: Consequences for the emergence of life

CL Kufner, DB Bucher, DD Sasselov - ChemSystemsChem, 2023 - Wiley Online Library
Absorption of ultraviolet (UV) radiation can trigger a variety of photophysical and
photochemical reactions in nucleic acids. In the prebiotic era, on the surface of the early …

Photoinduced charge separation and DNA self-repair depend on sequence directionality and stacking pattern

CL Kufner, S Crucilla, D Ding, P Stadlbauer… - Chemical …, 2024 - pubs.rsc.org
Charge separation is one of the most common consequences of the absorption of UV light
by DNA. Recently, it has been shown that this process can enable efficient self-repair of …

Real-time observation of sub-100-fs charge and energy transfer processes in DNA dinucleotides

V Petropoulos, L Martinez-Fernandez, L Uboldi… - Chemical …, 2024 - pubs.rsc.org
Using as showcase the DNA dinucleotide 5′-dTpdG-3′, in which the thymine (T) is
located at the 5′ end with respect to the guanine (G), we study the photoinduced electronic …

Effect of the DNA Polarity on the Relaxation of its Electronic Excited States

V Petropoulos, L Uboldi, M Maiuri… - The journal of …, 2023 - ACS Publications
The DNA polarity, ie., the order in which nucleobases are connected together via the
phosphodiester backbone, is crucial for several biological processes. But, so far, there has …

Sequence dependent UV damage of complete pools of oligonucleotides

CL Kufner, S Krebs, M Fischaleck… - Scientific Reports, 2023 - nature.com
Understanding the sequence-dependent DNA damage formation requires probing a
complete pool of sequences over a wide dose range of the damage-causing exposure. We …

Benchmarking quantum mechanical methods for the description of charge-transfer states in π-stacked nucleobases

C Zuluaga, VA Spata, S Matsika - Journal of Chemical Theory and …, 2020 - ACS Publications
Charge-transfer (CT) states are of special interest in photochemical research because they
can facilitate chemical reactions through the rearrangement of electrons and subsequently …

UV-driven self-repair of cyclobutane pyrimidine dimers in RNA

SJ Crucilla, D Ding, GG Lozano, JW Szostak… - Chemical …, 2023 - pubs.rsc.org
Nucleic acids can be damaged by ultraviolet (UV) irradiation, forming structural photolesions
such as cyclobutane-pyrimidine-dimers (CPD). In modern organisms, sophisticated …

Mechanistic Aspects of the Effect of Flanking Nucleotide Sequence on CPD Formation and CPD Self-Repair in DNA

W Lee, S Matsika - The Journal of Physical Chemistry B, 2022 - ACS Publications
A cyclobutane pyrimidine dimer (CPD) is a photolesion which is produced by a cycloaddition
reaction between two stacked pyrimidine bases upon UV light absorption. Because of its …

[HTML][HTML] Factors Affecting the Population of Excited Charge Transfer States in Adenine/Guanine Dinucleotides: A Joint Computational and Transient Absorption Study

V Petropoulos, L Martinez-Fernandez, L Uboldi… - Biomolecules, 2024 - mdpi.com
There is compelling evidence that the absorption of low-energy UV radiation directly by DNA
in solution generates guanine radicals with quantum yields that are strongly dependent on …