Physical non-equilibria for prebiotic nucleic acid chemistry
The prebiotic replication of DNA and RNA is a complex interplay between chemistry and the
environment. Factors that have direct and indirect effects on prebiotic chemistry include …
environment. Factors that have direct and indirect effects on prebiotic chemistry include …
The photophysics of nucleic acids: Consequences for the emergence of life
Absorption of ultraviolet (UV) radiation can trigger a variety of photophysical and
photochemical reactions in nucleic acids. In the prebiotic era, on the surface of the early …
photochemical reactions in nucleic acids. In the prebiotic era, on the surface of the early …
Photoinduced charge separation and DNA self-repair depend on sequence directionality and stacking pattern
Charge separation is one of the most common consequences of the absorption of UV light
by DNA. Recently, it has been shown that this process can enable efficient self-repair of …
by DNA. Recently, it has been shown that this process can enable efficient self-repair of …
Real-time observation of sub-100-fs charge and energy transfer processes in DNA dinucleotides
Using as showcase the DNA dinucleotide 5′-dTpdG-3′, in which the thymine (T) is
located at the 5′ end with respect to the guanine (G), we study the photoinduced electronic …
located at the 5′ end with respect to the guanine (G), we study the photoinduced electronic …
Effect of the DNA Polarity on the Relaxation of its Electronic Excited States
The DNA polarity, ie., the order in which nucleobases are connected together via the
phosphodiester backbone, is crucial for several biological processes. But, so far, there has …
phosphodiester backbone, is crucial for several biological processes. But, so far, there has …
Sequence dependent UV damage of complete pools of oligonucleotides
CL Kufner, S Krebs, M Fischaleck… - Scientific Reports, 2023 - nature.com
Understanding the sequence-dependent DNA damage formation requires probing a
complete pool of sequences over a wide dose range of the damage-causing exposure. We …
complete pool of sequences over a wide dose range of the damage-causing exposure. We …
Benchmarking quantum mechanical methods for the description of charge-transfer states in π-stacked nucleobases
Charge-transfer (CT) states are of special interest in photochemical research because they
can facilitate chemical reactions through the rearrangement of electrons and subsequently …
can facilitate chemical reactions through the rearrangement of electrons and subsequently …
UV-driven self-repair of cyclobutane pyrimidine dimers in RNA
Nucleic acids can be damaged by ultraviolet (UV) irradiation, forming structural photolesions
such as cyclobutane-pyrimidine-dimers (CPD). In modern organisms, sophisticated …
such as cyclobutane-pyrimidine-dimers (CPD). In modern organisms, sophisticated …
Mechanistic Aspects of the Effect of Flanking Nucleotide Sequence on CPD Formation and CPD Self-Repair in DNA
W Lee, S Matsika - The Journal of Physical Chemistry B, 2022 - ACS Publications
A cyclobutane pyrimidine dimer (CPD) is a photolesion which is produced by a cycloaddition
reaction between two stacked pyrimidine bases upon UV light absorption. Because of its …
reaction between two stacked pyrimidine bases upon UV light absorption. Because of its …
[HTML][HTML] Factors Affecting the Population of Excited Charge Transfer States in Adenine/Guanine Dinucleotides: A Joint Computational and Transient Absorption Study
There is compelling evidence that the absorption of low-energy UV radiation directly by DNA
in solution generates guanine radicals with quantum yields that are strongly dependent on …
in solution generates guanine radicals with quantum yields that are strongly dependent on …