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From compartments to loops: understanding the unique chromatin organization in neuronal cells
D Zagirova, A Kononkova, N Vaulin… - Epigenetics & Chromatin, 2024 - Springer
The three-dimensional organization of the genome plays a central role in the regulation of
cellular functions, particularly in the human brain. This review explores the intricacies of …
cellular functions, particularly in the human brain. This review explores the intricacies of …
A comprehensive revisit of the machine‐learning tools developed for the identification of enhancers in the human genome
LT Phan, C Oh, T He, B Manavalan - Proteomics, 2023 - Wiley Online Library
Enhancers are non‐coding DNA elements that play a crucial role in enhancing the
transcription rate of a specific gene in the genome. Experiments for identifying enhancers …
transcription rate of a specific gene in the genome. Experiments for identifying enhancers …
Integrative machine learning framework for the identification of cell-specific enhancers from the human genome
Enhancers are deoxyribonucleic acid (DNA) fragments which when bound by transcription
factors enhance the transcription of related genes. Due to its sporadic distribution and …
factors enhance the transcription of related genes. Due to its sporadic distribution and …
In vivo dissection of chamber-selective enhancers reveals estrogen-related receptor as a regulator of ventricular cardiomyocyte identity
Background: Cardiac chamber-selective transcriptional programs underpin the structural
and functional differences between atrial and ventricular cardiomyocytes (aCMs and vCMs) …
and functional differences between atrial and ventricular cardiomyocytes (aCMs and vCMs) …
Inner nuclear protein Matrin-3 coordinates cell differentiation by stabilizing chromatin architecture
Precise control of gene expression during differentiation relies on the interplay of chromatin
and nuclear structure. Despite an established contribution of nuclear membrane proteins to …
and nuclear structure. Despite an established contribution of nuclear membrane proteins to …
Map** the evolving landscape of super-enhancers during cell differentiation
Background Super-enhancers are clusters of enhancer elements that play critical roles in
the maintenance of cell identity. Current investigations on super-enhancers are centered on …
the maintenance of cell identity. Current investigations on super-enhancers are centered on …
Integrative analysis of transcriptomic and epigenomic data reveals distinct patterns for developmental and housekee** gene regulation
I Abnizova, C Stapel, R Boekhorst, JTH Lee… - BMC biology, 2024 - Springer
Background Regulation of transcription is central to the emergence of new cell types during
development, and it often involves activation of genes via proximal and distal regulatory …
development, and it often involves activation of genes via proximal and distal regulatory …
ARID1B, a molecular suppressor of erythropoiesis, is essential for the prevention of Monge's disease
P Azad, AB Caldwell, S Ramachandran… - … & molecular medicine, 2022 - nature.com
At high altitude Andean region, hypoxia-induced excessive erythrocytosis (EE) is the
defining feature of Monge's disease or chronic mountain sickness (CMS). At the same …
defining feature of Monge's disease or chronic mountain sickness (CMS). At the same …
Enhancers regulate 3′ end processing activity to control expression of alternative 3′ UTR isoforms
Multi-UTR genes are widely transcribed and express their alternative 3′ UTR isoforms in a
cell type-specific manner. As transcriptional enhancers regulate mRNA expression, we …
cell type-specific manner. As transcriptional enhancers regulate mRNA expression, we …
Three‐dimensional chromatin re‐organization during muscle stem cell aging
Age‐related skeletal muscle atrophy or sarcopenia is a significant societal problem that is
becoming amplified as the world's population continues to increase. The regeneration of …
becoming amplified as the world's population continues to increase. The regeneration of …