Advances and opportunities in malaria population genomics

DE Neafsey, AR Taylor, BL MacInnis - Nature Reviews Genetics, 2021 - nature.com
Almost 20 years have passed since the first reference genome assemblies were published
for Plasmodium falciparum, the deadliest malaria parasite, and Anopheles gambiae, the …

Chloroquine resistance evolution in Plasmodium falciparum is mediated by the putative amino acid transporter AAT1

A Amambua-Ngwa, KA Button-Simons, X Li… - Nature …, 2023 - nature.com
Malaria parasites break down host haemoglobin into peptides and amino acids in the
digestive vacuole for export to the parasite cytoplasm for growth: interrupting this process is …

Peeling the onion: how complex is the artemisinin resistance genetic trait of malaria parasites?

M Kucharski, S Nayak, M Gendrot, AM Dondorp… - Trends in …, 2024 - cell.com
The genetics of Plasmodium as an intracellular, mostly haploid, sexually reproducing,
eukaryotic organism with a complex life cycle, presents unprecedented challenges in …

Generation of a mutator parasite to drive resistome discovery in Plasmodium falciparum

K Kümpornsin, T Kochakarn, T Yeo, J Okombo… - Nature …, 2023 - nature.com
In vitro evolution of drug resistance is a powerful approach for identifying antimalarial
targets, however, key obstacles to eliciting resistance are the parasite inoculum size and …

Estimating relatedness between malaria parasites

AR Taylor, PE Jacob, DE Neafsey, CO Buckee - Genetics, 2019 - academic.oup.com
Understanding the relatedness of individuals within or between populations is a common
goal in biology. Increasingly, relatedness features in genetic epidemiology studies of …

Population-level genome-wide STR discovery and validation for population structure and genetic diversity assessment of Plasmodium species

J Han, JE Munro, A Kocoski, AE Barry, M Bahlo - PLoS Genetics, 2022 - journals.plos.org
Short tandem repeats (STRs) are highly informative genetic markers that have been used
extensively in population genetics analysis. They are an important source of genetic …

Genetic map** of fitness determinants across the malaria parasite Plasmodium falciparum life cycle

X Li, S Kumar, M McDew-White, M Haile… - PLoS …, 2019 - journals.plos.org
Determining the genetic basis of fitness is central to understanding evolution and
transmission of microbial pathogens. In human malaria parasites (Plasmodium falciparum) …

Comparative analysis of Plasmodium falciparum genoty** via SNP detection, microsatellite profiling, and whole-genome sequencing

M Kanai, T Yeo, V Asua, PJ Rosenthal… - Antimicrobial Agents …, 2022 - Am Soc Microbiol
Research efforts to combat antimalarial drug resistance rely on quick, robust, and sensitive
methods to genetically characterize Plasmodium falciparum parasites. We developed a …

Determination of the Stage Composition of Plasmodium Infections from Bulk Gene Expression Data

K Tebben, A Dia, D Serre - Msystems, 2022 - Am Soc Microbiol
Malaria symptoms are caused by the development of the parasites within the blood of an
infected host. Bulk RNA sequencing (RNA-seq) of infected blood can reveal interactions …

Single-genome sequencing reveals within-host evolution of human malaria parasites

A Dia, C Jett, SG Trevino, CS Chu, K Sriprawat… - Cell host & …, 2021 - cell.com
Population genomics of bulk malaria infections is unable to examine intrahost evolution;
therefore, most work has focused on the role of recombination in generating genetic …