AGO, a Framework for the Reconstruction of Ancestral Syntenies and Gene Orders
Reconstructing ancestral gene orders from the genome data of extant species is an
important problem in comparative and evolutionary genomics. In a phylogenomics setting …
important problem in comparative and evolutionary genomics. In a phylogenomics setting …
Bridging disparate views on the DCJ-Indel model for a cap**-free solution to the natural distance problem
L Bohnenkämper - 23rd International Workshop on Algorithms in …, 2023 - drops.dagstuhl.de
One of the most fundamental problems in genome rearrangement is the (genomic) distance
problem. It is typically formulated as finding the minimum number of rearrangements under a …
problem. It is typically formulated as finding the minimum number of rearrangements under a …
Evaluating impacts of syntenic block detection strategies on rearrangement phylogeny using Mycobacterium tuberculosis isolates
Motivation The phylogenetic signal of structural variation informs a more comprehensive
understanding of evolution. As (near-) complete genome assembly becomes more …
understanding of evolution. As (near-) complete genome assembly becomes more …
Recombinations, chains and caps: resolving problems with the DCJ-indel model
L Bohnenkämper - Algorithms for Molecular Biology, 2024 - Springer
One of the most fundamental problems in genome rearrangement studies is the (genomic)
distance problem. It is typically formulated as finding the minimum number of …
distance problem. It is typically formulated as finding the minimum number of …
Reconstructing Rearrangement Phylogenies of Natural Genomes
We study the classical problem of inferring ancestral genomes from a set of extant genomes
under a given phylogeny, known as the Small Parsimony Problem (SPP). Genomes are …
under a given phylogeny, known as the Small Parsimony Problem (SPP). Genomes are …
Introduction to the Special Issue of the 18th Annual International RECOMB Satellite Workshop on Comparative Genomics
RBH Williams, L Zhang - 2021 - scholarbank.nus.edu.sg
Introduction to the Special Issue of the 18th Annual International RECOMB Satellite
Workshop on Comparative Genomics | ScholarBank@NUS Skip navigation NUS …
Workshop on Comparative Genomics | ScholarBank@NUS Skip navigation NUS …