A systematic review of artificial intelligence and machine learning applications to inflammatory bowel disease, with practical guidelines for interpretation

IS Stafford, MM Gosink, E Mossotto… - Inflammatory Bowel …, 2022 - academic.oup.com
Background Inflammatory bowel disease (IBD) is a gastrointestinal chronic disease with an
unpredictable disease course. Computational methods such as machine learning (ML) have …

Inflammatory bowel disease genomics, transcriptomics, proteomics and metagenomics meet artificial intelligence

AL Cannarozzi, A Latiano, L Massimino… - United European …, 2024 - Wiley Online Library
Various extrinsic and intrinsic factors such as drug exposures, antibiotic treatments,
smoking, lifestyle, genetics, immune responses, and the gut microbiome characterize …

Machine learning for precision diagnostics of autoimmunity

J Kruta, R Carapito, M Trendelenburg, T Martin… - Scientific Reports, 2024 - nature.com
Early and accurate diagnosis is crucial to prevent disease development and define
therapeutic strategies. Due to predominantly unspecific symptoms, diagnosis of autoimmune …

On the limits of graph neural networks for the early diagnosis of Alzheimer's disease

L Hernández-Lorenzo, M Hoffmann, E Scheibling… - Scientific Reports, 2022 - nature.com
Alzheimer's disease (AD) is a neurodegenerative disease whose molecular mechanisms
are activated several years before cognitive symptoms appear. Genotype-based prediction …

Genome interpretation in a federated learning context allows the multi-center exome-based risk prediction of Crohn's disease patients

D Raimondi, H Chizari, N Verplaetse, BS Löscher… - Scientific Reports, 2023 - nature.com
High-throughput sequencing allowed the discovery of many disease variants, but nowadays
it is becoming clear that the abundance of genomics data mostly just moved the bottleneck …

Decoding the effects of synonymous variants

Z Zeng, AA Aptekmann, Y Bromberg - Nucleic acids research, 2021 - academic.oup.com
Synonymous single nucleotide variants (sSNVs) are common in the human genome but are
often overlooked. However, sSNVs can have significant biological impact and may lead to …

Supervised machine learning classifies inflammatory bowel disease patients by subtype using whole exome sequencing data

IS Stafford, JJ Ashton, E Mossotto… - Journal of Crohn's …, 2023 - academic.oup.com
Background Inflammatory bowel disease [IBD] is a chronic inflammatory disorder with two
main subtypes: Crohn's disease [CD] and ulcerative colitis [UC]. Prompt subtype diagnosis …

Large sample size and nonlinear sparse models outline epistatic effects in inflammatory bowel disease

N Verplaetse, A Passemiers, A Arany, Y Moreau… - Genome Biology, 2023 - Springer
Background Despite clear evidence of nonlinear interactions in the molecular architecture of
polygenic diseases, linear models have so far appeared optimal in genotype-to-phenotype …

[HTML][HTML] Machine learning modeling from omics data as prospective tool for improvement of inflammatory bowel disease diagnosis and clinical classifications

B Stankovic, N Kotur, G Nikcevic, V Gasic, B Zukic… - Genes, 2021 - mdpi.com
Research of inflammatory bowel disease (IBD) has identified numerous molecular players
involved in the disease development. Even so, the understanding of IBD is incomplete, while …

Advances in inflammatory bowel disease diagnostics: machine learning and genomic profiling reveal key biomarkers for early detection

AH Syed, HAS Abujabal, S Ahmad, SJ Malebary… - Diagnostics, 2024 - mdpi.com
This study, utilizing high-throughput technologies and Machine Learning (ML), has identified
gene biomarkers and molecular signatures in Inflammatory Bowel Disease (IBD). We could …