A common open representation of mass spectrometry data and its application to proteomics research

PGA Pedrioli, JK Eng, R Hubley, M Vogelzang… - Nature …, 2004 - nature.com
A broad range of mass spectrometers are used in mass spectrometry (MS)-based
proteomics research. Each type of instrument possesses a unique design, data system and …

Metabolic footprinting and systems biology: the medium is the message

DB Kell, M Brown, HM Davey, WB Dunn… - Nature reviews …, 2005 - nature.com
One element of classical systems analysis treats a system as a black or grey box, the inner
structure and behaviour of which can be analysed and modelled by varying an internal or …

The ontology for biomedical investigations

A Bandrowski, R Brinkman, M Brochhausen, MH Brush… - PloS one, 2016 - journals.plos.org
The Ontology for Biomedical Investigations (OBI) is an ontology that provides terms with
precisely defined meanings to describe all aspects of how investigations in the biological …

Overview of DNA microarrays: types, applications, and their future

R Bumgarner - Current protocols in molecular biology, 2013 - Wiley Online Library
This unit provides an overview of DNA microarrays. Microarrays are a technology in which
thousands of nucleic acids are bound to a surface and are used to measure the relative …

NCBI GEO: mining tens of millions of expression profiles—database and tools update

T Barrett, DB Troup, SE Wilhite, P Ledoux… - Nucleic acids …, 2007 - academic.oup.com
Abstract The Gene Expression Omnibus (GEO) repository at the National Center for
Biotechnology Information (NCBI) archives and freely disseminates microarray and other …

From genomics to proteomics

M Tyers, M Mann - Nature, 2003 - nature.com
Proteomics is the study of the function of all expressed proteins. Tremendous progress has
been made in the past few years in generating large-scale data sets for protein–protein …

Sharing detailed research data is associated with increased citation rate

HA Piwowar, RS Day, DB Fridsma - PloS one, 2007 - journals.plos.org
Background Sharing research data provides benefit to the general scientific community, but
the benefit is less obvious for the investigator who makes his or her data available. Principal …

[KSIĄŻKA][B] Henri Lefebvre: A critical introduction

A Merrifield - 2013 - books.google.com
Philosopher, sociologist and urban theorist, Henri Lefebvre is one of the great social
theorists of the twentieth century. This accessible and innovative introduction to the work of …

NCBI GEO: mining millions of expression profiles—database and tools

T Barrett, TO Suzek, DB Troup, SE Wilhite… - Nucleic acids …, 2005 - academic.oup.com
Abstract The Gene Expression Omnibus (GEO) at the National Center for Biotechnology
Information (NCBI) is the largest fully public repository for high-throughput molecular …

ArrayExpress—a public repository for microarray gene expression data at the EBI

A Brazma, H Parkinson, U Sarkans… - Nucleic acids …, 2003 - academic.oup.com
ArrayExpress is a new public database of microarray gene expression data at the EBI, which
is a generic gene expression database designed to hold data from all microarray platforms …