Microbial interactions for nutrient acquisition in soil: miners, scavengers, and carriers

T Cao, Y Luo, M Shi, X Tian, Y Kuzyakov - Soil Biology and Biochemistry, 2024 - Elsevier
Microbial interactions in soil are hidden, as they occur stealthily in a 'dark box'. This greatly
limits our understanding of microbial functions. Here, soil microorganisms were classified …

Cross-feeding in the gut microbiome: ecology and mechanisms

EJ Culp, AL Goodman - Cell host & microbe, 2023 - cell.com
Microbial communities are shaped by positive and negative interactions ranging from
competition to mutualism. In the context of the mammalian gut and its microbial inhabitants …

Nutrient supply controls the linkage between species abundance and ecological interactions in marine bacterial communities

T Dai, D Wen, CT Bates, L Wu, X Guo, S Liu… - Nature …, 2022 - nature.com
Nutrient scarcity is pervasive for natural microbial communities, affecting species
reproduction and co-existence. However, it remains unclear whether there are general rules …

The rumen microbiome: balancing food security and environmental impacts

I Mizrahi, RJ Wallace, S Moraïs - Nature Reviews Microbiology, 2021 - nature.com
Ruminants produce edible products and contribute to food security. They house a complex
rumen microbial community that enables the host to digest their plant feed through microbial …

Ecological modelling approaches for predicting emergent properties in microbial communities

NI van den Berg, D Machado, S Santos… - Nature ecology & …, 2022 - nature.com
Recent studies have brought forward the critical role of emergent properties in sha**
microbial communities and the ecosystems of which they are a part. Emergent properties …

Genome content predicts the carbon catabolic preferences of heterotrophic bacteria

M Gralka, S Pollak, OX Cordero - Nature Microbiology, 2023 - nature.com
Heterotrophic bacteria—bacteria that utilize organic carbon sources—are taxonomically and
functionally diverse across environments. It is challenging to map metabolic interactions and …

Carbon source shaped microbial ecology, metabolism and performance in denitrification systems

Y Pan, RZ Sun, Y Wang, GL Chen, YY Fu, HQ Yu - Water Research, 2023 - Elsevier
The limited information on microbial interactions and metabolic patterns in denitrification
systems, especially those fed with different carbon sources, has hindered the establishment …

In vitro interaction network of a synthetic gut bacterial community

AS Weiss, AG Burrichter, AC Durai Raj… - The ISME …, 2022 - academic.oup.com
A key challenge in microbiome research is to predict the functionality of microbial
communities based on community membership and (meta)-genomic data. As central …

The gut microbiome

GA Kuziel, S Rakoff-Nahoum - Current Biology, 2022 - cell.com
All animals, from cnidarians to humans, are colonized with microbes, and the greatest
diversity and magnitude of these host-associated microorganisms resides within the …

Home‐based microbial solution to boost crop growth in low‐fertility soil

M Jiang, M Delgado‐Baquerizo, MM Yuan… - New …, 2023 - Wiley Online Library
Soil microbial inoculants are expected to boost crop productivity under climate change and
soil degradation. However, the efficiency of native vs commercialized microbial inoculants in …