Virus taxonomy in the age of metagenomics

P Simmonds, MJ Adams, M Benkő, M Breitbart… - Nature Reviews …, 2017 - nature.com
The number and diversity of viral sequences that are identified in metagenomic data far
exceeds that of experimentally characterized virus isolates. In a recent workshop, a panel of …

[HTML][HTML] Origins and evolution of viruses of eukaryotes: The ultimate modularity

EV Koonin, VV Dolja, M Krupovic - Virology, 2015 - Elsevier
Viruses and other selfish genetic elements are dominant entities in the biosphere, with
respect to both physical abundance and genetic diversity. Various selfish elements …

Cryptic and abundant marine viruses at the evolutionary origins of Earth's RNA virome

AA Zayed, JM Wainaina, G Dominguez-Huerta… - Science, 2022 - science.org
Whereas DNA viruses are known to be abundant, diverse, and commonly key ecosystem
players, RNA viruses are insufficiently studied outside disease settings. In this study, we …

Diversity and ecological footprint of Global Ocean RNA viruses

G Dominguez-Huerta, AA Zayed, JM Wainaina, J Guo… - Science, 2022 - science.org
DNA viruses are increasingly recognized as influencing marine microbes and microbe-
mediated biogeochemical cycling. However, little is known about global marine RNA virus …

Metatranscriptomic reconstruction reveals RNA viruses with the potential to shape carbon cycling in soil

EP Starr, EE Nuccio, J Pett-Ridge… - Proceedings of the …, 2019 - National Acad Sciences
Viruses impact nearly all organisms on Earth, with ripples of influence in agriculture, health,
and biogeochemical processes. However, very little is known about RNA viruses in an …

[HTML][HTML] Metagenomics reshapes the concepts of RNA virus evolution by revealing extensive horizontal virus transfer

VV Dolja, EV Koonin - Virus research, 2018 - Elsevier
Virus metagenomics is a young research filed but it has already transformed our
understanding of virus diversity and evolution, and illuminated at a new level the …

Virus–host interactions and their roles in coral reef health and disease

RV Thurber, JP Payet, AR Thurber… - Nature Reviews …, 2017 - nature.com
Coral reefs occur in nutrient-poor shallow waters, constitute biodiversity and productivity
hotspots, and are threatened by anthropogenic disturbance. This Review provides an …

Coronaviruses in the Sea

GJ Mordecai, I Hewson - Frontiers in Microbiology, 2020 - frontiersin.org
Interest in coronaviruses because of the 2019 novel coronavirus (SARS-CoV-2) pandemic
has generated concern about their occurrence and persistence in aquatic habitats …

Environmental viral genomes shed new light on virus-host interactions in the ocean

Y Nishimura, H Watai, T Honda, T Mihara, K Omae… - Msphere, 2017 - Am Soc Microbiol
Metagenomics has revealed the existence of numerous uncharacterized viral lineages,
which are referred to as viral “dark matter.” However, our knowledge regarding viral …

A comprehensive method for amplicon-based and metagenomic characterization of viruses, bacteria, and eukaryotes in freshwater samples

MI Uyaguari-Diaz, M Chan, BL Chaban, MA Croxen… - Microbiome, 2016 - Springer
Background Studies of environmental microbiota typically target only specific groups of
microorganisms, with most focusing on bacteria through taxonomic classification of 16S …