Virus taxonomy in the age of metagenomics
The number and diversity of viral sequences that are identified in metagenomic data far
exceeds that of experimentally characterized virus isolates. In a recent workshop, a panel of …
exceeds that of experimentally characterized virus isolates. In a recent workshop, a panel of …
[HTML][HTML] Origins and evolution of viruses of eukaryotes: The ultimate modularity
Viruses and other selfish genetic elements are dominant entities in the biosphere, with
respect to both physical abundance and genetic diversity. Various selfish elements …
respect to both physical abundance and genetic diversity. Various selfish elements …
Cryptic and abundant marine viruses at the evolutionary origins of Earth's RNA virome
Whereas DNA viruses are known to be abundant, diverse, and commonly key ecosystem
players, RNA viruses are insufficiently studied outside disease settings. In this study, we …
players, RNA viruses are insufficiently studied outside disease settings. In this study, we …
Diversity and ecological footprint of Global Ocean RNA viruses
DNA viruses are increasingly recognized as influencing marine microbes and microbe-
mediated biogeochemical cycling. However, little is known about global marine RNA virus …
mediated biogeochemical cycling. However, little is known about global marine RNA virus …
Metatranscriptomic reconstruction reveals RNA viruses with the potential to shape carbon cycling in soil
Viruses impact nearly all organisms on Earth, with ripples of influence in agriculture, health,
and biogeochemical processes. However, very little is known about RNA viruses in an …
and biogeochemical processes. However, very little is known about RNA viruses in an …
[HTML][HTML] Metagenomics reshapes the concepts of RNA virus evolution by revealing extensive horizontal virus transfer
Virus metagenomics is a young research filed but it has already transformed our
understanding of virus diversity and evolution, and illuminated at a new level the …
understanding of virus diversity and evolution, and illuminated at a new level the …
Virus–host interactions and their roles in coral reef health and disease
Coral reefs occur in nutrient-poor shallow waters, constitute biodiversity and productivity
hotspots, and are threatened by anthropogenic disturbance. This Review provides an …
hotspots, and are threatened by anthropogenic disturbance. This Review provides an …
Coronaviruses in the Sea
Interest in coronaviruses because of the 2019 novel coronavirus (SARS-CoV-2) pandemic
has generated concern about their occurrence and persistence in aquatic habitats …
has generated concern about their occurrence and persistence in aquatic habitats …
Environmental viral genomes shed new light on virus-host interactions in the ocean
Y Nishimura, H Watai, T Honda, T Mihara, K Omae… - Msphere, 2017 - Am Soc Microbiol
Metagenomics has revealed the existence of numerous uncharacterized viral lineages,
which are referred to as viral “dark matter.” However, our knowledge regarding viral …
which are referred to as viral “dark matter.” However, our knowledge regarding viral …
A comprehensive method for amplicon-based and metagenomic characterization of viruses, bacteria, and eukaryotes in freshwater samples
Background Studies of environmental microbiota typically target only specific groups of
microorganisms, with most focusing on bacteria through taxonomic classification of 16S …
microorganisms, with most focusing on bacteria through taxonomic classification of 16S …