Genome evolution and the future of phylogenomics of non-avian reptiles

DC Card, WB Jennings, SV Edwards - Animals, 2023 - mdpi.com
Simple Summary As a group of organisms, non-avian reptiles, most of which are the~
11,000 species of lizards and snakes, are an extraordinarily diverse group, displaying a …

Unlocking the vault: Next‐generation museum population genomics

K Bi, T Linderoth, D Vanderpool, JM Good… - Molecular …, 2013 - Wiley Online Library
Natural history museum collections provide unique resources for understanding how
species respond to environmental change, including the abrupt, anthropogenic climate …

A chromosome-level genome assembly for the Pacific oyster Crassostrea gigas

C Penaloza, AP Gutierrez, L Eöry, S Wang, X Guo… - …, 2021 - academic.oup.com
Abstract Background The Pacific oyster (Crassostrea gigas) is a bivalve mollusc with vital
roles in coastal ecosystems and aquaculture globally. While extensive genomic tools are …

Diversification of complex butterfly wing patterns by repeated regulatory evolution of a Wnt ligand

A Martin, R Papa, NJ Nadeau, RI Hill… - Proceedings of the …, 2012 - pnas.org
Although animals display a rich variety of shapes and patterns, the genetic changes that
explain how complex forms arise are still unclear. Here we take advantage of the extensive …

The use of museum specimens with high-throughput DNA sequencers

AS Burrell, TR Disotell, CM Bergey - Journal of human evolution, 2015 - Elsevier
Natural history collections have long been used by morphologists, anatomists, and
taxonomists to probe the evolutionary process and describe biological diversity. These …

Genomic patterns of introgression in rainbow and westslope cutthroat trout illuminated by overlap** paired‐end RAD sequencing

PA Hohenlohe, MD Day, SJ Amish, MR Miller… - Molecular …, 2013 - Wiley Online Library
Rapid and inexpensive methods for genomewide single nucleotide polymorphism (SNP)
discovery and genoty** are urgently needed for population management and …

Adaptive divergence despite strong genetic drift: genomic analysis of the evolutionary mechanisms causing genetic differentiation in the island fox (Urocyon littoralis)

WC Funk, RE Lovich, PA Hohenlohe… - Molecular …, 2016 - Wiley Online Library
The evolutionary mechanisms generating the tremendous biodiversity of islands have long
fascinated evolutionary biologists. Genetic drift and divergent selection are predicted to be …

Predicting geographic location from genetic variation with deep neural networks

CJ Battey, PL Ralph, AD Kern - Elife, 2020 - elifesciences.org
Most organisms are more closely related to nearby than distant members of their species,
creating spatial autocorrelations in genetic data. This allows us to predict the location of …

Identification of a cis‐sex chromosome transition in banded geckos (Coleonyx, Eublepharidae, Gekkota)

SE Keating, E Greenbaum, JD Johnson… - Journal of …, 2022 - academic.oup.com
Sex‐determination systems are highly variable amongst vertebrate groups, and the
prevalence of genomic data has greatly expanded our knowledge of how diverse some …

Bs RAD seq: screening DNA methylation in natural populations of non‐model species

E Trucchi, AB Mazzarella, GD Gilfillan… - Molecular …, 2016 - Wiley Online Library
Epigenetic modifications are expected to occur at a much faster rate than genetic mutations,
potentially causing isolated populations to stochastically drift apart, or if they are subjected to …