Dynamics and interplay of nuclear architecture, genome organization, and gene expression

R Schneider, R Grosschedl - Genes & development, 2007 - genesdev.cshlp.org
The organization of the genome in the nucleus of a eukaryotic cell is fairly complex and
dynamic. Various features of the nuclear architecture, including compartmentalization of …

Genomic evolution of Hox gene clusters

D Lemons, W McGinnis - Science, 2006 - science.org
The family of Hox genes, which number 4 to 48 per genome depending on the animal,
control morphologies on the main body axis of nearly all metazoans. The conventional …

[BOOK][B] The regulatory genome: gene regulatory networks in development and evolution

EH Davidson - 2010 - books.google.com
Gene regulatory networks are the most complex, extensive control systems found in nature.
The interaction between biology and evolution has been the subject of great interest in …

Chromatin loops in gene regulation

S Kadauke, GA Blobel - Biochimica et Biophysica Acta (BBA)-Gene …, 2009 - Elsevier
The control of gene expression involves regulatory elements that can be very far from the
genes they control. Several recent technological advances have allowed the direct detection …

The genome of the crustacean Parhyale hawaiensis, a model for animal development, regeneration, immunity and lignocellulose digestion

D Kao, AG Lai, E Stamataki, S Rosic, N Konstantinides… - elife, 2016 - elifesciences.org
The amphipod crustacean Parhyale hawaiensis is a blossoming model system for studies of
developmental mechanisms and more recently regeneration. We have sequenced the …

Polycomb response elements mediate the formation of chromosome higher-order structures in the bithorax complex

C Lanzuolo, V Roure, J Dekker, F Bantignies… - Nature cell …, 2007 - nature.com
In Drosophila, the function of the Polycomb group genes (PcGs) and their target sequences
(Polycomb response elements (PREs)) is to convey mitotic heritability of transcription …

Epigenetic inheritance mediated by coupling of RNAi and histone H3K9 methylation

R Yu, X Wang, D Moazed - Nature, 2018 - nature.com
Histone post-translational modifications (PTMs) are associated with epigenetic states that
form the basis for cell-type-specific gene expression,. Once established, histone PTMs can …

CRISPR/Cas9 mutagenesis reveals versatile roles of Hox genes in crustacean limb specification and evolution

A Martin, JM Serano, E Jarvis, HS Bruce, J Wang… - Current Biology, 2016 - cell.com
Crustaceans possess a diverse array of specialized limbs. Although shifts in Hox gene
expression domains have been postulated to play a role in generating this limb diversity …

Drosophila microRNAs exhibit diverse spatial expression patterns during embryonic development

AA Aboobaker, P Tomancak, N Patel, GM Rubin… - Proceedings of the …, 2005 - pnas.org
MicroRNAs (miRNAs) are an extensive class of regulatory RNA whose specific functions in
animals are generally unknown. Although computational methods have identified many …

A new paradigm for developmental biology

JS Mattick - Journal of Experimental Biology, 2007 - journals.biologists.com
It is usually thought that the development of complex organisms is controlled by protein
regulatory factors and morphogenetic signals exchanged between cells and differentiating …