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Pathogenic or not? And if so, then how? Studying the effects of missense mutations using bioinformatics methods
J Thusberg, M Vihinen - Human mutation, 2009 - Wiley Online Library
Many gene defects are relatively easy to identify experimentally, but obtaining information
about the effects of sequence variations and elucidation of the detailed molecular …
about the effects of sequence variations and elucidation of the detailed molecular …
Protein interactions and disease: computational approaches to uncover the etiology of diseases
MG Kann - Briefings in bioinformatics, 2007 - academic.oup.com
The genomic era has been characterised by vast amounts of data from diverse sources,
creating a need for new tools to extract biologically meaningful information. Bioinformatics is …
creating a need for new tools to extract biologically meaningful information. Bioinformatics is …
SNPs3D: candidate gene and SNP selection for association studies
Background The relationship between disease susceptibility and genetic variation is
complex, and many different types of data are relevant. We describe a web resource and …
complex, and many different types of data are relevant. We describe a web resource and …
Impact of genetic variation on three dimensional structure and function of proteins
The Protein Data Bank (PDB; http://wwpdb. org) was established in 1971 as the first open
access digital data resource in biology with seven protein structures as its initial holdings …
access digital data resource in biology with seven protein structures as its initial holdings …
[HTML][HTML] Predicting the functional consequences of non-synonymous DNA sequence variants—evaluation of bioinformatics tools and development of a consensus …
The study of DNA sequence variation has been transformed by recent advances in DNA
sequencing technologies. Determination of the functional consequences of sequence …
sequencing technologies. Determination of the functional consequences of sequence …
Next generation tools for the annotation of human SNPs
R Karchin - Briefings in bioinformatics, 2009 - academic.oup.com
Computational biology has the opportunity to play an important role in the identification of
functional single nucleotide polymorphisms (SNPs) discovered in large-scale genoty** …
functional single nucleotide polymorphisms (SNPs) discovered in large-scale genoty** …
Free resources to assist structure-based virtual ligand screening experiments
BO Villoutreix, N Renault, D Lagorce… - Current Protein and …, 2007 - ingentaconnect.com
In today's research environment, a wealth of experimental/theoretical structural data is
available and the number of therapeutically relevant macromolecular structures is growing …
available and the number of therapeutically relevant macromolecular structures is growing …
xPyder: a PyMOL plugin to analyze coupled residues and their networks in protein structures.
A versatile method to directly identify and analyze short-or long-range coupled or
communicating residues in a protein conformational ensemble is of extreme relevance to …
communicating residues in a protein conformational ensemble is of extreme relevance to …
CanProVar: a human cancer proteome variation database
Identification and annotation of mutated genes or proteins involved in oncogenesis and
tumor progression are crucial for both cancer biology and clinical applications. We have …
tumor progression are crucial for both cancer biology and clinical applications. We have …
Molecular dynamics-based analyses of the structural instability and secondary structure of the fibrinogen gamma chain protein with the D356V mutation
Mutations in the fibrinogen gamma chain (FGG) gene have been associated with various
disorders, such as dysfibrinogenemia, thrombophilia, and hypofibrinogenemia. A literature …
disorders, such as dysfibrinogenemia, thrombophilia, and hypofibrinogenemia. A literature …