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Array programming with NumPy
Array programming provides a powerful, compact and expressive syntax for accessing,
manipulating and operating on data in vectors, matrices and higher-dimensional arrays …
manipulating and operating on data in vectors, matrices and higher-dimensional arrays …
The Chronus quantum software package
Abstract The Chronus Quantum (ChronusQ) software package is an open source (under the
GNU General Public License v2) software infrastructure which targets the solution of …
GNU General Public License v2) software infrastructure which targets the solution of …
sdmTMB: an R package for fast, flexible, and user-friendly generalized linear mixed effects models with spatial and spatiotemporal random fields
Geostatistical data—spatially referenced observations related to some continuous spatial
phenomenon—are ubiquitous in ecology and can reveal ecological processes and inform …
phenomenon—are ubiquitous in ecology and can reveal ecological processes and inform …
FastSpar: rapid and scalable correlation estimation for compositional data
A common goal of microbiome studies is the elucidation of community composition and
member interactions using counts of taxonomic units extracted from sequence data …
member interactions using counts of taxonomic units extracted from sequence data …
AUGEM: automatically generate high performance dense linear algebra kernels on x86 CPUs
Basic Liner algebra subprograms (BLAS) is a fundamental library in scientific computing. In
this paper, we present a template-based optimization framework, AUGEM, which can …
this paper, we present a template-based optimization framework, AUGEM, which can …
Tabla: A unified template-based framework for accelerating statistical machine learning
A growing number of commercial and enterprise systems increasingly rely on compute-
intensive Machine Learning (ML) algorithms. While the demand for these compute-intensive …
intensive Machine Learning (ML) algorithms. While the demand for these compute-intensive …
Smash: Co-designing software compression and hardware-accelerated indexing for efficient sparse matrix operations
Important workloads, such as machine learning and graph analytics applications, heavily
involve sparse linear algebra operations. These operations use sparse matrix compression …
involve sparse linear algebra operations. These operations use sparse matrix compression …
A hybrid gene selection approach to create the S1500+ targeted gene sets for use in high-throughput transcriptomics
Changes in gene expression can help reveal the mechanisms of disease processes and the
mode of action for toxicities and adverse effects on cellular responses induced by exposures …
mode of action for toxicities and adverse effects on cellular responses induced by exposures …
Caffeinated FPGAs: FPGA framework for convolutional neural networks
Convolutional Neural Networks (CNNs) have gained significant traction in the field of
machine learning, particularly due to their high accuracy in visual recognition. Recent works …
machine learning, particularly due to their high accuracy in visual recognition. Recent works …
Anatomy of high-performance many-threaded matrix multiplication
BLIS is a new framework for rapid instantiation of the BLAS. We describe how BLIS extends
the" GotoBLAS approach" to implementing matrix multiplication (GEMM). While GEMM was …
the" GotoBLAS approach" to implementing matrix multiplication (GEMM). While GEMM was …