Clinical use of current polygenic risk scores may exacerbate health disparities

AR Martin, M Kanai, Y Kamatani, Y Okada, BM Neale… - Nature …, 2019 - nature.com
Polygenic risk scores (PRS) are poised to improve biomedical outcomes via precision
medicine. However, the major ethical and scientific challenge surrounding clinical …

Host genetics and infectious disease: new tools, insights and translational opportunities

AJ Kwok, A Mentzer, JC Knight - Nature Reviews Genetics, 2021 - nature.com
Understanding how human genetics influence infectious disease susceptibility offers the
opportunity for new insights into pathogenesis, potential drug targets, risk stratification …

Efficient phasing and imputation of low-coverage sequencing data using large reference panels

S Rubinacci, DM Ribeiro, RJ Hofmeister, O Delaneau - Nature Genetics, 2021 - nature.com
Low-coverage whole-genome sequencing followed by imputation has been proposed as a
cost-effective genoty** approach for disease and population genetics studies. However …

Creation and judicious application of a wheat resistance gene atlas

AN Hafeez, S Arora, S Ghosh, D Gilbert, RL Bowden… - Molecular Plant, 2021 - cell.com
Disease-resistance (R) gene cloning in wheat (Triticum aestivum) has been accelerated by
the recent surge of genomic resources, facilitated by advances in sequencing technologies …

Evaluating genotype imputation pipeline for ultra-low coverage ancient genomes

R Hui, E D'Atanasio, LM Cassidy, CL Scheib… - Scientific Reports, 2020 - nature.com
Although ancient DNA data have become increasingly more important in studies about past
populations, it is often not feasible or practical to obtain high coverage genomes from poorly …

Low-pass sequencing increases the power of GWAS and decreases measurement error of polygenic risk scores compared to genoty** arrays

JH Li, CA Mazur, T Berisa, JK Pickrell - Genome research, 2021 - genome.cshlp.org
Low-pass sequencing (sequencing a genome to an average depth less than 1× coverage)
combined with genotype imputation has been proposed as an alternative to genoty** …

Low coverage whole genome sequencing enables accurate assessment of common variants and calculation of genome-wide polygenic scores

JR Homburger, CL Neben, G Mishne, AY Zhou… - Genome medicine, 2019 - Springer
Background Inherited susceptibility to common, complex diseases may be caused by rare,
pathogenic variants (“monogenic”) or by the cumulative effect of numerous common variants …

Twelve years into genomic selection in forest trees: climbing the slope of enlightenment of marker assisted tree breeding

D Grattapaglia - Forests, 2022 - mdpi.com
Twelve years have passed since the early outlooks of applying genomic selection (GS) to
forest tree breeding, initially based on deterministic simulations, soon followed by empirical …

Accelerated deciphering of the genetic architecture of agricultural economic traits in pigs using a low-coverage whole-genome sequencing strategy

R Yang, X Guo, D Zhu, C Tan, C Bian, J Ren… - …, 2021 - academic.oup.com
Background Uncovering the genetic architecture of economic traits in pigs is important for
agricultural breeding. However, high-density haplotype reference panels are unavailable in …

The transferability of lipid loci across African, Asian and European cohorts

K Kuchenbaecker, N Telkar, T Reiker… - Nature …, 2019 - nature.com
Most genome-wide association studies are based on samples of European descent. We
assess whether the genetic determinants of blood lipids, a major cardiovascular risk factor …