Integrating knowledge and omics to decipher mechanisms via large‐scale models of signaling networks
Signal transduction governs cellular behavior, and its dysregulation often leads to human
disease. To understand this process, we can use network models based on prior …
disease. To understand this process, we can use network models based on prior …
[HTML][HTML] A proteogenomic portrait of lung squamous cell carcinoma
Lung squamous cell carcinoma (LSCC) remains a leading cause of cancer death with few
therapeutic options. We characterized the proteogenomic landscape of LSCC, providing a …
therapeutic options. We characterized the proteogenomic landscape of LSCC, providing a …
Platelet proteomes, pathways, and phenotypes as informants of vascular wellness and disease
JE Aslan - Arteriosclerosis, thrombosis, and vascular biology, 2021 - Am Heart Assoc
Platelets rapidly undergo responsive transitions in form and function to repair vascular
endothelium and mediate hemostasis. In contrast, heterogeneous platelet subpopulations …
endothelium and mediate hemostasis. In contrast, heterogeneous platelet subpopulations …
Pathway Commons 2019 Update: integration, analysis and exploration of pathway data
Abstract Pathway Commons (https://www. pathwaycommons. org) is an integrated resource
of publicly available information about biological pathways including biochemical reactions …
of publicly available information about biological pathways including biochemical reactions …
[HTML][HTML] Pan-cancer analysis of post-translational modifications reveals shared patterns of protein regulation
Post-translational modifications (PTMs) play key roles in regulating cell signaling and
physiology in both normal and cancer cells. Advances in mass spectrometry enable high …
physiology in both normal and cancer cells. Advances in mass spectrometry enable high …
[HTML][HTML] Proteogenomic and metabolomic characterization of human glioblastoma
Glioblastoma (GBM) is the most aggressive nervous system cancer. Understanding its
molecular pathogenesis is crucial to improving diagnosis and treatment. Integrated analysis …
molecular pathogenesis is crucial to improving diagnosis and treatment. Integrated analysis …
[HTML][HTML] The AML microenvironment catalyzes a stepwise evolution to gilteritinib resistance
Our study details the stepwise evolution of gilteritinib resistance in FLT3-mutated acute
myeloid leukemia (AML). Early resistance is mediated by the bone marrow …
myeloid leukemia (AML). Early resistance is mediated by the bone marrow …
Automated assembly of molecular mechanisms at scale from text mining and curated databases
The analysis of omic data depends on machine‐readable information about protein
interactions, modifications, and activities as found in protein interaction networks, databases …
interactions, modifications, and activities as found in protein interaction networks, databases …
Phosphoproteomic quantitation and causal analysis reveal pathways in GPVI/ITAM-mediated platelet activation programs
Platelets engage cues of pending vascular injury through coordinated adhesion, secretion,
and aggregation responses. These rapid, progressive changes in platelet form and function …
and aggregation responses. These rapid, progressive changes in platelet form and function …
PPM1D mutations are oncogenic drivers of de novo diffuse midline glioma formation
The role of PPM1D mutations in de novo gliomagenesis has not been systematically
explored. Here we analyze whole genome sequences of 170 pediatric high-grade gliomas …
explored. Here we analyze whole genome sequences of 170 pediatric high-grade gliomas …