Bayesian models for functional magnetic resonance imaging data analysis

L Zhang, M Guindani… - Wiley Interdisciplinary …, 2015 - Wiley Online Library
Functional magnetic resonance imaging (fMRI), a noninvasive neuroimaging method that
provides an indirect measure of neuronal activity by detecting blood flow changes, has …

Clustering gene expression time series data using an infinite Gaussian process mixture model

IC McDowell, D Manandhar, CM Vockley… - PLoS computational …, 2018 - journals.plos.org
Transcriptome-wide time series expression profiling is used to characterize the cellular
response to environmental perturbations. The first step to analyzing transcriptional response …

A spatiotemporal nonparametric Bayesian model of multi-subject fMRI data

L Zhang, M Guindani, F Versace, JM Engelmann… - 2016 - projecteuclid.org
A spatiotemporal nonparametric Bayesian model of multi-subject fMRI data Page 1 The Annals
of Applied Statistics 2016, Vol. 10, No. 2, 638–666 DOI: 10.1214/16-AOAS926 © Institute of …

Structural analysis of fMRI data revisited: improving the sensitivity and reliability of fMRI group studies

B Thirion, P Pinel, A Tucholka, A Roche… - IEEE transactions on …, 2007 - ieeexplore.ieee.org
Group studies of functional magnetic resonance imaging datasets are usually based on the
computation of the mean signal across subjects at each voxel (random effects analyses) …

Hierarchical Dirichlet processes with random effects

S Kim, P Smyth - Advances in Neural Information …, 2006 - proceedings.neurips.cc
Data sets involving multiple groups with shared characteristics frequently arise in practice. In
this paper we extend hierarchical Dirichlet processes to model such data. Each group is …

A Bayesian mixture approach to modeling spatial activation patterns in multisite fMRI data

S Kim, P Smyth, H Stern - IEEE transactions on medical …, 2010 - ieeexplore.ieee.org
We propose a probabilistic model for analyzing spatial activation patterns in multiple
functional magnetic resonance imaging (fMRI) activation images such as repeated …

Infinite mixture-of-experts model for sparse survival regression with application to breast cancer

S Raman, TJ Fuchs, PJ Wild, E Dahl, JM Buhmann… - BMC …, 2010 - Springer
Background We present an infinite mixture-of-experts model to find an unknown number of
sub-groups within a given patient cohort based on survival analysis. The effect of patient …

[PDF][PDF] Bayesian methods for tensor regression

R Guhaniyogi - Wiley StatsRef: Statistics Reference Online, 2020 - tr.soe.ucsc.edu
For many applications pertaining to neuroimaging, social science, international relations,
chemometrics, genomics and molecular-omics, datasets often involve variables which are …

Dealing with spatial normalization errors in fMRI group inference using hierarchical modeling

M Keller, A Roche, A Tucholka, B Thirion - Statistica Sinica, 2008 - JSTOR
An important challenge in neuroimaging multi-subject studies is to take into account that
different brains cannot be aligned perfectly. To this end, we extend the classical mass …

Random spatial structure of geometric deformations and Bayesian nonparametrics

C Seiler, X Pennec, S Holmes - International Conference on Geometric …, 2013 - Springer
Our work is motivated by the geometric study of lower back pain from patient CT images. In
this paper, we take a first step towards that goal by introducing a data-driven way of …