Understanding host-microbiome-environment interactions: Insights from Daphnia as a model organism

S Akbar, L Gu, Y Sun, L Zhang, K Lyu, Y Huang… - Science of the Total …, 2022 - Elsevier
Microbes perform a variety of vital functions that are essential for healthy ecosystems,
ranging from nutrient recycling, antibiotic production and waste decomposition. In many …

Persistence of antibiotic resistance genes in large subalpine lakes: the role of anthropogenic pollution and ecological interactions

EM Eckert, A Di Cesare, M Coci, G Corno - Hydrobiologia, 2018 - Springer
The spread of antibiotic-resistant bacteria is a threatening risk for human health at a global
scale. Improved knowledge on the cycle of antibiotic resistance spread between human and …

Continental‐scale variation in seaweed host‐associated bacterial communities is a function of host condition, not geography

EM Marzinelli, AH Campbell… - Environmental …, 2015 - Wiley Online Library
Interactions between hosts and associated microbial communities can fundamentally shape
the development and ecology of 'holobionts', from humans to marine habitat‐forming …

Freshwater zooplankton microbiome composition is highly flexible and strongly influenced by the environment

EM Eckert, N Anicic, D Fontaneto - Molecular ecology, 2021 - Wiley Online Library
The association with microbes in plants and animals is known to be beneficial for host's
survival and fitness, but the generality of the effect of the microbiome is still debated. For …

The hologenome of Daphnia magna reveals possible DNA methylation and microbiome-mediated evolution of the host genome

A Chaturvedi, X Li, V Dhandapani… - Nucleic Acids …, 2023 - academic.oup.com
Abstract Properties that make organisms ideal laboratory models in developmental and
medical research are often the ones that also make them less representative of wild …

Food availability affects the strength of mutualistic host–microbiota interactions in Daphnia magna

M Callens, E Macke, K Muylaert, P Bossier… - The ISME …, 2016 - academic.oup.com
The symbiotic gut microbial community is generally known to have a strong impact on the
fitness of its host. Nevertheless, it is less clear how the impact of symbiotic interactions on …

Bacteria-Mediated Effects of Antibiotics on Daphnia Nutrition

E Gorokhova, C Rivetti, S Furuhagen… - … science & technology, 2015 - ACS Publications
In polluted environments, contaminant effects may be manifested via both direct toxicity to
the host and changes in its microbiota, affecting bacteria–host interactions. In this context …

Diet and genotype of an aquatic invertebrate affect the composition of free-living microbial communities

E Macke, M Callens, F Massol… - Frontiers in …, 2020 - frontiersin.org
In spite of the growing interest in the role of the gut microbiome (GM) in host physiology and
health, the mechanisms governing its assembly and its effects on the environment are poorly …

Betaproteobacteria Limnohabitans strains increase fecundity in the crustacean Daphnia magna: symbiotic relationship between major bacterioplankton and …

S Peerakietkhajorn, Y Kato, V Kasalický… - Environmental …, 2016 - Wiley Online Library
How symbioses between bacteria and aquatic animals influence food webs in freshwater
ecosystems is a fundamental question in ecology. We investigated symbiosis between a …

MMinte: an application for predicting metabolic interactions among the microbial species in a community

H Mendes-Soares, M Mundy, LM Soares, N Chia - BMC bioinformatics, 2016 - Springer
Background The explosive growth of microbiome research has yielded great quantities of
data. These data provide us with many answers, but raise just as many questions. 16S rDNA …