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Initial recommendations for performing, benchmarking and reporting single-cell proteomics experiments
Analyzing proteins from single cells by tandem mass spectrometry (MS) has recently
become technically feasible. While such analysis has the potential to accurately quantify …
become technically feasible. While such analysis has the potential to accurately quantify …
[HTML][HTML] Acquisition and analysis of DIA-based proteomic data: A comprehensive survey in 2023
R Lou, W Shui - Molecular & Cellular Proteomics, 2024 - Elsevier
Data-independent acquisition (DIA) mass spectrometry (MS) has emerged as a powerful
technology for high-throughput, accurate, and reproducible quantitative proteomics. This …
technology for high-throughput, accurate, and reproducible quantitative proteomics. This …
The ProteomeXchange consortium at 10 years: 2023 update
Mass spectrometry (MS) is by far the most used experimental approach in high-throughput
proteomics. The ProteomeXchange (PX) consortium of proteomics resources (http://www …
proteomics. The ProteomeXchange (PX) consortium of proteomics resources (http://www …
The PRIDE database at 20 years: 2025 update
Abstract The PRoteomics IDEntifications (PRIDE) database (https://www. ebi. ac. uk/pride/) is
the world's leading mass spectrometry (MS)-based proteomics data repository and one of …
the world's leading mass spectrometry (MS)-based proteomics data repository and one of …
The PRIDE database resources in 2022: a hub for mass spectrometry-based proteomics evidences
Y Perez-Riverol, J Bai, C Bandla… - Nucleic acids …, 2022 - academic.oup.com
Abstract The PRoteomics IDEntifications (PRIDE) database (https://www. ebi. ac. uk/pride/) is
the world's largest data repository of mass spectrometry-based proteomics data. PRIDE is …
the world's largest data repository of mass spectrometry-based proteomics data. PRIDE is …
A knowledge graph to interpret clinical proteomics data
Implementing precision medicine hinges on the integration of omics data, such as
proteomics, into the clinical decision-making process, but the quantity and diversity of …
proteomics, into the clinical decision-making process, but the quantity and diversity of …
[HTML][HTML] PaxDb 5.0: curated protein quantification data suggests adaptive proteome changes in yeasts
Abstract The “Protein Abundances Across Organisms” database (PaxDb) is an integrative
metaresource dedicated to protein abundance levels, in tissue-specific or whole-organism …
metaresource dedicated to protein abundance levels, in tissue-specific or whole-organism …
MaxDIA enables library-based and library-free data-independent acquisition proteomics
MaxDIA is a software platform for analyzing data-independent acquisition (DIA) proteomics
data within the MaxQuant software environment. Using spectral libraries, MaxDIA achieves …
data within the MaxQuant software environment. Using spectral libraries, MaxDIA achieves …
The ProteomeXchange consortium in 2020: enabling 'big data'approaches in proteomics
EW Deutsch, N Bandeira, V Sharma… - Nucleic acids …, 2020 - academic.oup.com
The ProteomeXchange (PX) consortium of proteomics resources (http://www.
proteomexchange. org) has standardized data submission and dissemination of mass …
proteomexchange. org) has standardized data submission and dissemination of mass …
The PRIDE database and related tools and resources in 2019: improving support for quantification data
Abstract The PRoteomics IDEntifications (PRIDE) database (https://www. ebi. ac. uk/pride/) is
the world's largest data repository of mass spectrometry-based proteomics data, and is one …
the world's largest data repository of mass spectrometry-based proteomics data, and is one …