Mechanisms, detection, and relevance of protein acetylation in prokaryotes

DG Christensen, JT Baumgartner, X **e, KM Jew… - MBio, 2019 - Am Soc Microbiol
Posttranslational modification of a protein, either alone or in combination with other
modifications, can control properties of that protein, such as enzymatic activity, localization …

Regulation of RNA processing and degradation in bacteria

A Trinquier, S Durand, F Braun, C Condon - Biochimica et Biophysica Acta …, 2020 - Elsevier
Messenger RNA processing and decay is a key mechanism to control gene expression at
the post-transcriptional level in response to ever-changing environmental conditions. In this …

Growth rate is modulated by monitoring cell wall precursors in Bacillus subtilis

Y Sun, S Hürlimann, E Garner - Nature Microbiology, 2023 - nature.com
How bacteria link their growth rate to external nutrient conditions is unknown. To investigate
how Bacillus subtilis cells alter the rate at which they expand their cell walls as they grow …

Comparison of proteomic responses as global approach to antibiotic mechanism of action elucidation

CHR Senges, JJ Stepanek, M Wenzel… - Antimicrobial agents …, 2020 - Am Soc Microbiol
New antibiotics are urgently needed to address the mounting resistance challenge. In early
drug discovery, one of the bottlenecks is the elucidation of targets and mechanisms. To …

Engineering of Multiple Modules to Improve Amorphadiene Production in Bacillus subtilis Using CRISPR-Cas9

Y Song, S He, II Abdallah, A Jopkiewicz… - Journal of Agricultural …, 2021 - ACS Publications
Engineering strategies to improve terpenoids' production in Bacillus subtilis mainly focus on
2 C-methyl-d-erythritol-4-phosphate (MEP) pathway overexpression. To systematically …

Optimized proteomics workflow for the detection of small proteins

J Bartel, AR Varadarajan, T Sura… - Journal of proteome …, 2020 - ACS Publications
Small open reading frame encoded proteins (SEPs) gained increasing interest during the
last few years because of their broad range of important functions in both prokaryotes and …

Taxonomically Restricted Genes in Bacillus may Form Clusters of Homologs and Can be Traced to a Large Reservoir of Noncoding Sequences

WM Karlowski, D Varshney… - Genome Biology and …, 2023 - academic.oup.com
Taxonomically restricted genes (TRGs) are unique for a defined group of organisms and
may act as potential genetic determinants of lineage-specific, biological properties. Here, we …

Combination of Proteogenomics with Peptide De Novo Sequencing Identifies New Genes and Hidden Posttranscriptional Modifications

B Blank-Landeshammer, I Teichert, R Märker… - MBio, 2019 - Am Soc Microbiol
Proteogenomics combines proteomics, genomics, and transcriptomics and has considerably
improved genome annotation in poorly investigated phylogenetic groups for which …

Integrative characterization of the near‐minimal bacterium Mesoplasma florum

D Matteau, JC Lachance, F Grenier… - Molecular Systems …, 2020 - embopress.org
The near‐minimal bacterium Mesoplasma florum is an interesting model for synthetic
genomics and systems biology due to its small genome (~ 800 kb), fast growth rate, and lack …

Deep proteogenomics of a photosynthetic cyanobacterium

P Spät, V Krauspe, WR Hess, B Macek… - Journal of Proteome …, 2023 - ACS Publications
Cyanobacteria, the evolutionary ancestors of plant chloroplasts, contribute substantially to
the Earth's biogeochemical cycles and are of great interest for a sustainable economy …