Chicken hepatic response to chronic heat stress using integrated transcriptome and metabolome analysis

SF Jastrebski, SJ Lamont, CJ Schmidt - PloS one, 2017 - journals.plos.org
The liver plays a central role in metabolism and is important in maintaining homeostasis
throughout the body. This study integrated transcriptomic and metabolomic data to …

LongStitch: high-quality genome assembly correction and scaffolding using long reads

L Coombe, JX Li, T Lo, J Wong, V Nikolic, RL Warren… - BMC …, 2021 - Springer
Background Generating high-quality de novo genome assemblies is foundational to the
genomics study of model and non-model organisms. In recent years, long-read sequencing …

Effective data visualization strategies in untargeted metabolomics

K Mildau, H Ehlers, M Meisenburg, E Del Pup… - Natural Product …, 2025 - pubs.rsc.org
Covering: 2014 to 2023 for metabolomics, 2002 to 2023 for information visualization LC-
MS/MS-based untargeted metabolomics is a rapidly develo** research field spawning …

[HTML][HTML] An introduction to and survey of biological network visualization

H Ehlers, N Brich, M Krone, M Nöllenburg, J Yu… - Computers & …, 2025 - Elsevier
Biological networks describe complex relationships in biological systems, which represent
biological entities as vertices and their underlying connectivity as edges. Ideally, for a …

Development of a clinical decision support system for antibiotic management in a hospital environment

B Cánovas-Segura, M Campos, A Morales… - Progress in artificial …, 2016 - Springer
The rise of infections caused by multidrug-resistant bacteria has become a very important
issue for health institutions around the world, urging them to a more appropriate use of …

Exemplar-based layout fine-tuning for node-link diagrams

J Pan, W Chen, X Zhao, S Zhou, W Zeng… - … on Visualization and …, 2020 - ieeexplore.ieee.org
We design and evaluate a novel layout fine-tuning technique for node-link diagrams that
facilitates exemplar-based adjustment of a group of substructures in batching mode. The key …

Modeling and visualizing student flow

M Raji, J Duggan, B DeCotes, J Huang… - … Transactions on Big …, 2018 - ieeexplore.ieee.org
In this work, we present a data science system to model and visualize student flow patterns
based on electronic student data of a university. Our system is called eCamp. The datasets …

Visual progression analysis of student records data

M Raji, J Duggan, B DeCotes, J Huang… - … IEEE Visualization in …, 2017 - ieeexplore.ieee.org
University curriculum, both on a campus level and on a per-major level, are affected in a
complex way by many decisions of many administrators and faculty over time. As …

MetumpX—a metabolomics support package for untargeted mass spectrometry

B Wajid, H Iqbal, M Jamil, H Rafique, F Anwar - Bioinformatics, 2020 - academic.oup.com
Motivation Metabolomics is a data analysis and interpretation field aiming to study functions
of small molecules within the organism. Consequently Metabolomics requires researchers in …

Regulation of apoA1 gene expression with acidosis: requirement for a transcriptional repressor

MJ Haas, D Reinacher, JP Li… - Journal of …, 2001 - jme.bioscientifica.com
Insulin-like 3 (INSL3), a hormone produced by Leydig cells, regulates testicular descent
during foetal life and bone metabolism in adults. Despite its importance, little is known about …