Nematode identification techniques and recent advances

M Bogale, A Baniya, P DiGennaro - Plants, 2020 - mdpi.com
Nematodes are among the most diverse but least studied organisms. The classic
morphology-based identification has proved insufficient to the study of nematode …

A new versatile primer set targeting a short fragment of the mitochondrial COI region for metabarcoding metazoan diversity: application for characterizing coral reef fish …

M Leray, JY Yang, CP Meyer, SC Mills, N Agudelo… - Frontiers in …, 2013 - Springer
Introduction The PCR-based analysis of homologous genes has become one of the most
powerful approaches for species detection and identification, particularly with the recent …

[HTML][HTML] Metagenetic tools for the census of marine meiofaunal biodiversity: An overview

L Carugati, C Corinaldesi, A Dell'Anno, R Danovaro - Marine genomics, 2015 - Elsevier
Marine organisms belonging to meiofauna (size range: 20–500 μm) are amongst the most
abundant and highly diversified metazoans on Earth including 22 over 35 known animal …

Environmental DNA (eDNA) metabarcoding reveals strong discrimination among diverse marine habitats connected by water movement

GJ Jeunen, M Knapp, HG Spencer… - Molecular Ecology …, 2019 - Wiley Online Library
While in recent years environmental DNA (eDNA) metabarcoding surveys have shown great
promise as an alternative monitoring method, the integration into existing marine monitoring …

Ecology of free-living marine nematodes

T Moens, U Braeckman, S Derycke… - Handbook of Zoology …, 2013 - degruyter.com
To the public at large, the phylum Nematoda is mostly known by its pathogenic species,
causing some of the most infectious diseases in humans and animals and more crop losses …

Evaluating detection limits of next-generation sequencing for the surveillance and monitoring of international marine pests

X Pochon, NJ Bott, KF Smith, SA Wood - PloS one, 2013 - journals.plos.org
Most surveillance programmes for marine invasive species (MIS) require considerable
taxonomic expertise, are laborious, and are unable to identify species at larval or juvenile …

Metabarcoding free‐living marine nematodes using curated 18S and CO1 reference sequence databases for species‐level taxonomic assignments

L Macheriotou, K Guilini, TN Bezerra… - Ecology and …, 2019 - Wiley Online Library
High‐throughput sequencing has the potential to describe biological communities with high
efficiency yet comprehensive assessment of diversity with species‐level resolution remains …

Advancing nematode barcoding: A primer cocktail for the cytochrome c oxidase subunit I gene from vertebrate parasitic nematodes

SWJ Prosser, MG Velarde‐Aguilar… - Molecular Ecology …, 2013 - Wiley Online Library
Although nematodes are one of the most diverse metazoan phyla, species identification
through morphology is difficult. Several genetic markers have been used for their …

DNA metabarcoding methods for the study of marine benthic meiofauna: A review

R Gielings, M Fais, D Fontaneto, S Creer… - Frontiers in Marine …, 2021 - frontiersin.org
Meiofaunal animals, roughly between 0.045 and 1 mm in size, are ubiquitous and
ecologically important inhabitants of benthic marine ecosystems. Their high species …

Nematode mitochondrial metagenomics: A new tool for biodiversity analysis

EM Gendron, JL Sevigny, I Byiringiro… - Molecular Ecology …, 2023 - Wiley Online Library
DNA barcoding approaches have greatly increased our understanding of biodiversity on the
planet, and metabarcoding is widely used for classifying members of the phylum Nematoda …