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Accelerating antibiotic discovery through artificial intelligence
By targeting invasive organisms, antibiotics insert themselves into the ancient struggle of the
host-pathogen evolutionary arms race. As pathogens evolve tactics for evading antibiotics …
host-pathogen evolutionary arms race. As pathogens evolve tactics for evading antibiotics …
[HTML][HTML] Matrikines as mediators of tissue remodelling
N Jariwala, M Ozols, M Bell, E Bradley… - Advanced drug delivery …, 2022 - Elsevier
Extracellular matrix (ECM) proteins confer biomechanical properties, maintain cell
phenotype and mediate tissue repair (via release of sequestered cytokines and proteases) …
phenotype and mediate tissue repair (via release of sequestered cytokines and proteases) …
Molecular de-extinction of ancient antimicrobial peptides enabled by machine learning
Molecular de-extinction could offer avenues for drug discovery by reintroducing bioactive
molecules that are no longer encoded by extant organisms. To prospect for antimicrobial …
molecules that are no longer encoded by extant organisms. To prospect for antimicrobial …
iProt-Sub: a comprehensive package for accurately map** and predicting protease-specific substrates and cleavage sites
Regulation of proteolysis plays a critical role in a myriad of important cellular processes. The
key to better understanding the mechanisms that control this process is to identify the …
key to better understanding the mechanisms that control this process is to identify the …
PROSPER: an integrated feature-based tool for predicting protease substrate cleavage sites
The ability to catalytically cleave protein substrates after synthesis is fundamental for all
forms of life. Accordingly, site-specific proteolysis is one of the most important post …
forms of life. Accordingly, site-specific proteolysis is one of the most important post …
DeepCleave: a deep learning predictor for caspase and matrix metalloprotease substrates and cleavage sites
Motivation Proteases are enzymes that cleave target substrate proteins by catalyzing the
hydrolysis of peptide bonds between specific amino acids. While the functional proteolysis …
hydrolysis of peptide bonds between specific amino acids. While the functional proteolysis …
PROSPERous: high-throughput prediction of substrate cleavage sites for 90 proteases with improved accuracy
Proteases are enzymes that specifically cleave the peptide backbone of their target proteins.
As an important type of irreversible post-translational modification, protein cleavage …
As an important type of irreversible post-translational modification, protein cleavage …
Procleave: predicting protease-specific substrate cleavage sites by combining sequence and structural information
Proteases are enzymes that cleave and hydrolyse the peptide bonds between two specific
amino acid residues of target substrate proteins. Protease-controlled proteolysis plays a key …
amino acid residues of target substrate proteins. Protease-controlled proteolysis plays a key …
Twenty years of bioinformatics research for protease-specific substrate and cleavage site prediction: a comprehensive revisit and benchmarking of existing methods
The roles of proteolytic cleavage have been intensively investigated and discussed during
the past two decades. This irreversible chemical process has been frequently reported to …
the past two decades. This irreversible chemical process has been frequently reported to …
Prediction and design of protease enzyme specificity using a structure-aware graph convolutional network
Site-specific proteolysis by the enzymatic cleavage of small linear sequence motifs is a key
posttranslational modification involved in physiology and disease. The ability to robustly and …
posttranslational modification involved in physiology and disease. The ability to robustly and …