In Silico Tools and Approaches for the Prediction of Functional and Structural Effects of Single-Nucleotide Polymorphisms on Proteins: An Expert Review

M Yazar, P Özbek - OMICS: A Journal of Integrative Biology, 2021 - liebertpub.com
Single-nucleotide polymorphisms (SNPs) are single-base variants that contribute to human
biological variation and pathogenesis of many human diseases. Among all SNP types …

Assessing the clinical utility of protein structural analysis in genomic variant classification: experiences from a diagnostic laboratory

RC Caswell, AC Gunning, MM Owens, S Ellard… - Genome Medicine, 2022 - Springer
Background The widespread clinical application of genome-wide sequencing has resulted
in many new diagnoses for rare genetic conditions, but testing regularly identifies variants of …

Genome sequencing and comprehensive rare-variant analysis of 465 families with neurodevelopmental disorders

A Sanchis-Juan, K Megy, J Stephens… - The American Journal of …, 2023 - cell.com
Despite significant progress in unraveling the genetic causes of neurodevelopmental
disorders (NDDs), a substantial proportion of individuals with NDDs remain without a …

[HTML][HTML] De novo VPS4A mutations cause multisystem disease with abnormal neurodevelopment

C Rodger, E Flex, RJ Allison, A Sanchis-Juan… - The American Journal of …, 2020 - cell.com
The endosomal sorting complexes required for transport (ESCRTs) are essential for multiple
membrane modeling and membrane-independent cellular processes. Here we describe six …

Refinements and considerations for trio whole-genome sequence analysis when investigating Mendelian diseases presenting in early childhood

CE French, H Dolling, K Mégy, A Sanchis-Juan… - Human Genetics and …, 2022 - cell.com
To facilitate early deployment of whole-genome sequencing (WGS) for severely ill children,
a standardized pipeline for WGS analysis with timely turnaround and primary care pediatric …

A novel de novo GABRA2 gene missense variant causing developmental epileptic encephalopathy in a Chinese patient

L Yang, X Wan, R Hua, J Jiang, B Wang… - Annals of Clinical …, 2024 - Wiley Online Library
Background Variants in the GABRA2 gene, which encodes the α2 subunit of the γ‐
aminobutyric acid A receptor, have been linked to a rare form of developmental and epileptic …

Computational Investigation of Structural and Functional Effects of Cancer Related Variants

M Yazar - 2023 - search.proquest.com
Tek nükleotid varyantları (TNV'ler), gen ekspresyonu, protein katlanması ve diğerleri
arasında protein-protein etkileşimleri dahil olmak üzere hücredeki birçok biyolojik işlevi …

[HTML][HTML] Map** the Constrained Coding Regions in the human genome to their corresponding proteins

MA Hasenahuer, A Sanchis-Juan, RA Laskowski… - Journal of Molecular …, 2023 - Elsevier
Abstract Constrained Coding Regions (CCRs) in the human genome have been derived
from DNA sequencing data of large cohorts of healthy control populations, available in the …

Expansion of the Mutation and Phenotype Spectrum of the GABRA2-related developmental and epileptic encephalopathy78

T Guo, P Wang, B Yang, W Gu, H Wang, H Zhu… - 2024 - researchsquare.com
Background Developmental and epileptic encephalopathy 78 is a severe neurological
disease characterized by intractable seizures and severe intellectual disability (ID). It was …

[PDF][PDF] Isabelle Delon, 2 Matthew Wakeling, 4 Lucy Mallin, 5 Shruti Agrawal, 2 Topun Austin, Florence Walston, 6 Soo-Mi Park, 2 Alasdair Parker, 2 Chinthika Piyasena …

CE French, H Dolling, K Mégy, A Sanchis-Juan… - 2022 - researchgate.net
To facilitate early deployment of whole-genome sequencing (WGS) for severely ill children,
a standardized pipeline for WGS analysis with timely turnaround and primary care pediatric …