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RNA editing in the forefront of epitranscriptomics and human health
T Christofi, A Zaravinos - Journal of translational medicine, 2019 - Springer
Post-transcriptional modifications have been recently expanded with the addition of RNA
editing, which is predominantly mediated by adenosine and cytidine deaminases acting on …
editing, which is predominantly mediated by adenosine and cytidine deaminases acting on …
Proteogenomics from a bioinformatics angle: A growing field
Proteogenomics is a research area that combines areas as proteomics and genomics in a
multi‐omics setup using both mass spectrometry and high‐throughput sequencing …
multi‐omics setup using both mass spectrometry and high‐throughput sequencing …
DARNED: a DAtabase of RNa EDiting in humans
Motivation: RNA editing is a phenomenon, which is responsible for the alteration of
particular nucleotides in RNA sequences relative to their genomic templates. Recently, a …
particular nucleotides in RNA sequences relative to their genomic templates. Recently, a …
LNCediting: a database for functional effects of RNA editing in lncRNAs
RNA editing is a widespread post-transcriptional mechanism that can make a single base
change on specific nucleotide sequence in an RNA transcript. RNA editing events can result …
change on specific nucleotide sequence in an RNA transcript. RNA editing events can result …
Plant editosome database: a curated database of RNA editosome in plants
RNA editing plays an important role in plant development and growth, enlisting a number of
editing factors in the editing process and accordingly revealing the diversity of plant …
editing factors in the editing process and accordingly revealing the diversity of plant …
RNA editing in plants: A comprehensive survey of bioinformatics tools and databases
RNA editing is a widespread epitranscriptomic mechanism by which primary RNAs are
specifically modified through insertions/deletions or nucleotide substitutions. In plants, RNA …
specifically modified through insertions/deletions or nucleotide substitutions. In plants, RNA …
REDIdb 3.0: a comprehensive collection of RNA editing events in plant organellar genomes
RNA editing is an important epigenetic mechanism by which genome-encoded transcripts
are modified by substitutions, insertions and/or deletions. It was first discovered in …
are modified by substitutions, insertions and/or deletions. It was first discovered in …
Editome Disease Knowledgebase (EDK): a curated knowledgebase of editome-disease associations in human
RNA editing, as an essential co-/post-transcriptional RNA modification type, plays critical
roles in many biological processes and involves with a variety of human diseases. Although …
roles in many biological processes and involves with a variety of human diseases. Although …
Alternative applications for distinct RNA sequencing strategies
Recent advances in RNA library preparation methods, platform accessibility and cost
efficiency have allowed high-throughput RNA sequencing (RNAseq) to replace conventional …
efficiency have allowed high-throughput RNA sequencing (RNAseq) to replace conventional …
Correlation between amino acid residues converted by RNA editing and functional residues in protein three-dimensional structures in plant organelles
K Yura, M Go - BMC Plant Biology, 2008 - Springer
Background In plant organelles, specific messenger RNAs (mRNAs) are subjected to
conversion editing, a process that often converts the first or second nucleotide of a codon …
conversion editing, a process that often converts the first or second nucleotide of a codon …