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Upcoming progress of transcriptomics studies on plants: An overview
P Tyagi, D Singh, S Mathur, A Singh… - Frontiers in Plant …, 2022 - frontiersin.org
Transcriptome sequencing or RNA-Sequencing is a high-resolution, sensitive and high-
throughput next-generation sequencing (NGS) approach used to study non-model plants …
throughput next-generation sequencing (NGS) approach used to study non-model plants …
Alternative splicing control of abiotic stress responses
Alternative splicing, which generates multiple transcripts from the same gene, is an
important modulator of gene expression that can increase proteome diversity and regulate …
important modulator of gene expression that can increase proteome diversity and regulate …
A high resolution map of the Arabidopsis thaliana developmental transcriptome based on RNA‐seq profiling
Arabidopsis thaliana is a long established model species for plant molecular biology,
genetics and genomics, and studies of A. thaliana gene function provide the basis for …
genetics and genomics, and studies of A. thaliana gene function provide the basis for …
A survey of the sorghum transcriptome using single-molecule long reads
SE Abdel-Ghany, M Hamilton, JL Jacobi… - Nature …, 2016 - nature.com
Alternative splicing and alternative polyadenylation (APA) of pre-mRNAs greatly contribute
to transcriptome diversity, coding capacity of a genome and gene regulatory mechanisms in …
to transcriptome diversity, coding capacity of a genome and gene regulatory mechanisms in …
The Brassica oleracea genome reveals the asymmetrical evolution of polyploid genomes
S Liu, Y Liu, X Yang, C Tong, D Edwards… - Nature …, 2014 - nature.com
Polyploidization has provided much genetic variation for plant adaptive evolution, but the
mechanisms by which the molecular evolution of polyploid genomes establishes genetic …
mechanisms by which the molecular evolution of polyploid genomes establishes genetic …
Analysis of RNA-Seq data using TopHat and Cufflinks
S Ghosh, CKK Chan - Plant Bioinformatics: Methods and Protocols, 2016 - Springer
The recent advances in high throughput RNA sequencing (RNA-Seq) have generated huge
amounts of data in a very short span of time for a single sample. These data have required …
amounts of data in a very short span of time for a single sample. These data have required …
Alternative splicing of TaHSFA6e modulates heat shock protein–mediated translational regulation in response to heat stress in wheat
J Wen, Z Qin, L Sun, Y Zhang, D Wang, H Peng… - New …, 2023 - Wiley Online Library
Heat stress greatly threatens crop production. Plants have evolved multiple adaptive
mechanisms, including alternative splicing, that allow them to withstand this stress …
mechanisms, including alternative splicing, that allow them to withstand this stress …
Splicing regulation by long noncoding RNAs
N Romero-Barrios, MF Legascue… - Nucleic acids …, 2018 - academic.oup.com
Massive high-throughput sequencing techniques allowed the identification of thousands of
noncoding RNAs (ncRNAs) and a plethora of different mRNA processing events occurring in …
noncoding RNAs (ncRNAs) and a plethora of different mRNA processing events occurring in …
Complexity of the alternative splicing landscape in plants
Alternative splicing (AS) of precursor mRNAs (pre-mRNAs) from multiexon genes allows
organisms to increase their coding potential and regulate gene expression through multiple …
organisms to increase their coding potential and regulate gene expression through multiple …
The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools
P Lamesch, TZ Berardini, D Li, D Swarbreck… - Nucleic acids …, 2012 - academic.oup.com
Abstract The Arabidopsis Information Resource (TAIR, http://arabidopsis. org) is a genome
database for Arabidopsis thaliana, an important reference organism for many fundamental …
database for Arabidopsis thaliana, an important reference organism for many fundamental …