Advances in hydrogen/deuterium exchange mass spectrometry and the pursuit of challenging biological systems

EI James, TA Murphree, C Vorauer, JR Engen… - Chemical …, 2021 - ACS Publications
Solution-phase hydrogen/deuterium exchange (HDX) coupled to mass spectrometry (MS) is
a widespread tool for structural analysis across academia and the biopharmaceutical …

An overview of hydrogen deuterium exchange mass spectrometry (HDX-MS) in drug discovery

GR Masson, ML Jenkins, JE Burke - Expert opinion on drug …, 2017 - Taylor & Francis
Introduction: Hydrogen deuterium exchange mass spectrometry (HDX-MS) is a powerful
methodology to study protein dynamics, protein folding, protein-protein interactions, and …

Identification of a conserved S2 epitope present on spike proteins from all highly pathogenic coronaviruses

RP Silva, Y Huang, AW Nguyen, CL Hsieh… - Elife, 2023 - elifesciences.org
To address the ongoing SARS-CoV-2 pandemic and prepare for future coronavirus
outbreaks, understanding the protective potential of epitopes conserved across SARS-CoV …

Structural dynamics in the evolution of SARS-CoV-2 spike glycoprotein

V Calvaresi, AG Wrobel, J Toporowska… - Nature …, 2023 - nature.com
SARS-CoV-2 spike glycoprotein mediates receptor binding and subsequent membrane
fusion. It exists in a range of conformations, including a closed state unable to bind the ACE2 …

Rpn1 provides adjacent receptor sites for substrate binding and deubiquitination by the proteasome

Y Shi, X Chen, S Elsasser, BB Stocks, G Tian, BH Lee… - Science, 2016 - science.org
INTRODUCTION The ubiquitin-proteasome system comprises hundreds of distinct pathways
of degradation, which converge at the step of ubiquitin recognition by the proteasome. Five …

HDX workbench: software for the analysis of H/D exchange MS data

BD Pascal, S Willis, JL Lauer… - Journal of the …, 2012 - ACS Publications
Hydrogen/deuterium exchange mass spectrometry (HDX-MS) is an established method for
the interrogation of protein conformation and dynamics. While the data analysis challenge of …

Differential hydrogen/deuterium exchange mass spectrometry analysis of protein–ligand interactions

MJ Chalmers, SA Busby, BD Pascal… - Expert review of …, 2011 - Taylor & Francis
Functional regulation of ligand-activated receptors is driven by alterations in the
conformational dynamics of the protein upon ligand binding. Differential hydrogen/deuterium …

Contemporary hydrogen deuterium exchange mass spectrometry

I Oganesyan, C Lento, DJ Wilson - Methods, 2018 - Elsevier
Hydrogen/deuterium exchange (HDX) mass spectrometry (MS) emerged as a tool for
biochemistry and structural biology around 25 years ago. It has since become a key …

Bridging protein structure, dynamics, and function using hydrogen/deuterium‐exchange mass spectrometry

EA Hodge, MA Benhaim, KK Lee - Protein Science, 2020 - Wiley Online Library
Much of our understanding of protein structure and mechanistic function has been derived
from static high‐resolution structures. As structural biology has continued to evolve it has …

Structural insights into perilipin 3 membrane association in response to diacylglycerol accumulation

YM Choi, D Ajjaji, KD Fleming, PP Borbat… - Nature …, 2023 - nature.com
Lipid droplets (LDs) are dynamic organelles that contain an oil core mainly composed of
triglycerides (TAG) that is surrounded by a phospholipid monolayer and LD-associated …