The colored de Bruijn graph (cdbg) and its variants have become an important combinatorial
structure used in numerous areas in genomics, such as population-level variation detection …

High-throughput DNA sequencing data are accumulating in public repositories, and efficient
approaches for storing and indexing such data are in high demand. In recent research …

Suffix trees are one of the most versatile data structures in stringology, with many
applications in bioinformatics. Their main drawback is their size, which can be tens of times …

The colored de Bruijn graph, an extension of the de Bruijn graph, is routinely applied for
variant calling, genoty**, genome assembly, and various other applications 11. In this …

The colored de Bruijn graph is a variation of the de Bruijn graph that has recently been
utilized for indexing sequencing reads. Although state-of-the-art methods have achieved …

Technological advances made over the last decades in sequencing technologies have led
to continuous improvements of quality and ever-decreasing costs of sequencing. All this …

High-throughput DNA sequencing data is accumulating in public repositories, and efficient
approaches for storing and indexing such data are in high demand. In recent research …

High-throughput DNA sequencing data is accumulating in public repositories, and efficient
approaches for storing and indexing such data are in high demand. In recent research …