Finding the genomic basis of local adaptation: pitfalls, practical solutions, and future directions

S Hoban, JL Kelley, KE Lotterhos… - The American …, 2016 - journals.uchicago.edu
Uncovering the genetic and evolutionary basis of local adaptation is a major focus of
evolutionary biology. The recent development of cost-effective methods for obtaining high …

Sex chromosome evolution: so many exceptions to the rules

BLS Furman, DCH Metzger, I Darolti… - Genome biology and …, 2020 - academic.oup.com
Genomic analysis of many nonmodel species has uncovered an incredible diversity of sex
chromosome systems, making it possible to empirically test the rich body of evolutionary …

How to identify sex chromosomes and their turnover

DH Palmer, TF Rogers, R Dean, AE Wright - Molecular ecology, 2019 - Wiley Online Library
Although sex is a fundamental component of eukaryotic reproduction, the genetic systems
that control sex determination are highly variable. In many organisms the presence of sex …

ngsLD: evaluating linkage disequilibrium using genotype likelihoods

EA Fox, AE Wright, M Fumagalli, FG Vieira - Bioinformatics, 2019 - academic.oup.com
Motivation Linkage disequilibrium (LD) measures the correlation between genetic loci and is
highly informative for association map** and population genetics. As many studies rely on …

Sex-biased gene expression

S Grath, J Parsch - Annual review of genetics, 2016 - annualreviews.org
Methods of transcriptional profiling have made it possible to compare gene expression
between females and males on a genome-wide scale. Such studies have revealed that sex …

Sexual selection drives evolution and rapid turnover of male gene expression

PW Harrison, AE Wright, F Zimmer, R Dean… - Proceedings of the …, 2015 - pnas.org
The profound and pervasive differences in gene expression observed between males and
females, and the unique evolutionary properties of these genes in many species, have led to …

Evolution and expression patterns of the neo-sex chromosomes of the crested ibis

L Xu, Y Ren, J Wu, T Cui, R Dong, C Huang… - Nature …, 2024 - nature.com
Bird sex chromosomes play a unique role in sex-determination, and affect the sexual
morphology and behavior of bird species. Core waterbirds, a major clade of birds, share the …

Sex chromosomes and speciation in birds and other ZW systems

DE Irwin - Molecular Ecology, 2018 - Wiley Online Library
Abstract Theory and empirical patterns suggest a disproportionate role for sex chromosomes
in evolution and speciation. Focusing on ZW sex determination (females ZW, males ZZ; the …

Evaluating genomic signatures of “the large X‐effect” during complex speciation

DC Presgraves - Molecular ecology, 2018 - Wiley Online Library
The ubiquity of the “two rules of speciation”—Haldane's rule and the large X‐effect—implies
a general, special role for sex chromosomes in the evolution of intrinsic postzygotic …

Convergent recombination suppression suggests role of sexual selection in guppy sex chromosome formation

AE Wright, I Darolti, NI Bloch, V Oostra… - Nature …, 2017 - nature.com
Sex chromosomes evolve once recombination is halted between a homologous pair of
chromosomes. The dominant model of sex chromosome evolution posits that recombination …