Neural injective functions for multisets, measures and graphs via a finite witness theorem
Injective multiset functions have a key role in the theoretical study of machine learning on
multisets and graphs. Yet, there remains a gap between the provably injective multiset …
multisets and graphs. Yet, there remains a gap between the provably injective multiset …
A Hitchhiker's Guide to Geometric GNNs for 3D Atomic Systems
Recent advances in computational modelling of atomic systems, spanning molecules,
proteins, and materials, represent them as geometric graphs with atoms embedded as …
proteins, and materials, represent them as geometric graphs with atoms embedded as …
On the Completeness of Invariant Geometric Deep Learning Models
Invariant models, one important class of geometric deep learning models, are capable of
generating meaningful geometric representations by leveraging informative geometric …
generating meaningful geometric representations by leveraging informative geometric …
Transferable deep generative modeling of intrinsically disordered protein conformations
Intrinsically disordered proteins have dynamic structures through which they play key
biological roles. The elucidation of their conformational ensembles is a challenging problem …
biological roles. The elucidation of their conformational ensembles is a challenging problem …
On dimensionality of feature vectors in MPNNs
We revisit the classical result of Morris et al.~(AAAI'19) that message-passing graphs neural
networks (MPNNs) are equal in their distinguishing power to the Weisfeiler--Leman (WL) …
networks (MPNNs) are equal in their distinguishing power to the Weisfeiler--Leman (WL) …
Geometric Representation Condition Improves Equivariant Molecule Generation
Recent advancements in molecular generative models have demonstrated substantial
potential in accelerating scientific discovery, particularly in drug design. However, these …
potential in accelerating scientific discovery, particularly in drug design. However, these …
Towards Stable, Globally Expressive Graph Representations with Laplacian Eigenvectors
Graph neural networks (GNNs) have achieved remarkable success in a variety of machine
learning tasks over graph data. Existing GNNs usually rely on message passing, ie …
learning tasks over graph data. Existing GNNs usually rely on message passing, ie …
Weisfeiler Leman for Euclidean Equivariant Machine Learning
The $ k $-Weifeiler-Leman ($ k $-WL) graph isomorphism test hierarchy is a common
method for assessing the expressive power of graph neural networks (GNNs). Recently, the …
method for assessing the expressive power of graph neural networks (GNNs). Recently, the …
VisDiff: SDF-Guided Polygon Generation for Visibility Reconstruction and Recognition
The capability to learn latent representations plays a key role in the effectiveness of recent
machine learning methods. An active frontier in representation learning is understanding …
machine learning methods. An active frontier in representation learning is understanding …
On the Expressive Power of Sparse Geometric MPNNs
Motivated by applications in chemistry and other sciences, we study the expressive power of
message-passing neural networks for geometric graphs, whose node features correspond to …
message-passing neural networks for geometric graphs, whose node features correspond to …