Insect genomes: progress and challenges

F Li, X Zhao, M Li, K He, C Huang, Y Zhou… - Insect molecular …, 2019 - Wiley Online Library
In the wake of constant improvements in sequencing technologies, numerous insect
genomes have been sequenced. Currently, 1219 insect genome‐sequencing projects have …

Inversion breakpoints and the evolution of supergenes

R Villoutreix, D Ayala, M Joron, Z Gompert… - Molecular …, 2021 - Wiley Online Library
The coexistence of discrete morphs that differ in multiple traits is common within natural
populations of many taxa. Such morphs are often associated with chromosomal inversions …

Genome sequence of Gossypium herbaceum and genome updates of Gossypium arboreum and Gossypium hirsutum provide insights into cotton A-genome …

G Huang, Z Wu, RG Percy, M Bai, Y Li… - Nature …, 2020 - nature.com
Upon assembling the first Gossypium herbaceum (A1) genome and substantially improving
the existing Gossypium arboreum (A2) and Gossypium hirsutum ((AD) 1) genomes, we …

A beginner's guide to low‐coverage whole genome sequencing for population genomics

RN Lou, A Jacobs, AP Wilder… - Molecular …, 2021 - Wiley Online Library
Low‐coverage whole genome sequencing (lcWGS) has emerged as a powerful and cost‐
effective approach for population genomic studies in both model and nonmodel species …

Genomic architecture and introgression shape a butterfly radiation

NB Edelman, PB Frandsen, M Miyagi, B Clavijo… - Science, 2019 - science.org
We used 20 de novo genome assemblies to probe the speciation history and architecture of
gene flow in rapidly radiating Heliconius butterflies. Our tests to distinguish incomplete …

Lep-MAP3: robust linkage map** even for low-coverage whole genome sequencing data

P Rastas - Bioinformatics, 2017 - academic.oup.com
Motivation Accurate and dense linkage maps are useful in family-based linkage and
association studies, quantitative trait locus map**, analysis of genome synteny and other …

Recombination rate variation shapes barriers to introgression across butterfly genomes

SH Martin, JW Davey, C Salazar, CD Jiggins - PLoS biology, 2019 - journals.plos.org
Hybridisation and introgression can dramatically alter the relationships among groups of
species, leading to phylogenetic discordance across the genome and between populations …

Exploring evolutionary relationships across the genome using topology weighting

SH Martin, SM Van Belleghem - Genetics, 2017 - academic.oup.com
We introduce the concept of topology weighting, a method for quantifying relationships
between taxa that are not necessarily monophyletic, and visualizing how these relationships …

Macroevolutionary shifts of WntA function potentiate butterfly wing-pattern diversity

A Mazo-Vargas, C Concha, L Livraghi… - Proceedings of the …, 2017 - pnas.org
Butterfly wing patterns provide a rich comparative framework to study how morphological
complexity develops and evolves. Here we used CRISPR/Cas9 somatic mutagenesis to test …

Single master regulatory gene coordinates the evolution and development of butterfly color and iridescence

L Zhang, A Mazo-Vargas, RD Reed - … of the National Academy of Sciences, 2017 - pnas.org
The optix gene has been implicated in butterfly wing pattern adaptation by genetic
association, map**, and expression studies. The actual developmental function of this …