Profiling cell identity and tissue architecture with single-cell and spatial transcriptomics
Single-cell transcriptomics has broadened our understanding of cellular diversity and gene
expression dynamics in healthy and diseased tissues. Recently, spatial transcriptomics has …
expression dynamics in healthy and diseased tissues. Recently, spatial transcriptomics has …
Single-cell analysis in rheumatic and allergic diseases: insights for clinical practice
M Nishide, H Shimagami, A Kumanogoh - Nature Reviews Immunology, 2024 - nature.com
Since the advent of single-cell RNA sequencing (scRNA-seq) methodology, single-cell
analysis has become a powerful tool for exploration of cellular networks and dysregulated …
analysis has become a powerful tool for exploration of cellular networks and dysregulated …
Multi-modal generative modeling for joint analysis of single-cell T cell receptor and gene expression data
Recent advances in single-cell immune profiling have enabled the simultaneous
measurement of transcriptome and T cell receptor (TCR) sequences, offering great potential …
measurement of transcriptome and T cell receptor (TCR) sequences, offering great potential …
Considerations for building and using integrated single-cell atlases
The rapid adoption of single-cell technologies has created an opportunity to build single-cell
'atlases' integrating diverse datasets across many laboratories. Such atlases can serve as a …
'atlases' integrating diverse datasets across many laboratories. Such atlases can serve as a …
Single-cell integration reveals metaplasia in inflammatory gut diseases
The gastrointestinal tract is a multi-organ system crucial for efficient nutrient uptake and
barrier immunity. Advances in genomics and a surge in gastrointestinal diseases, has …
barrier immunity. Advances in genomics and a surge in gastrointestinal diseases, has …
Delineating the effective use of self-supervised learning in single-cell genomics
Self-supervised learning (SSL) has emerged as a powerful method for extracting meaningful
representations from vast, unlabelled datasets, transforming computer vision and natural …
representations from vast, unlabelled datasets, transforming computer vision and natural …
Establishing a human bone marrow single cell reference atlas to study ageing and diseases
Introduction Ageing in the human bone marrow is associated with immune function decline
that results in the elderly being vulnerable to illnesses. A comprehensive healthy bone …
that results in the elderly being vulnerable to illnesses. A comprehensive healthy bone …
Estimating the impact of single-cell RNA sequencing of human tissues on drug target validation
Early characterization of drug targets associated with disease can greatly reduce clinical
failures attributed to lack of safety or efficacy. As single-cell RNA sequencing (scRNA-seq) of …
failures attributed to lack of safety or efficacy. As single-cell RNA sequencing (scRNA-seq) of …
Computational single cell oncology: state of the art
Single cell computational analysis has emerged as a powerful tool in the field of oncology,
enabling researchers to decipher the complex cellular heterogeneity that characterizes …
enabling researchers to decipher the complex cellular heterogeneity that characterizes …
Rapid Identification of Cell Types and Phenotypic States Using a One-Polymer Multichannel Nanosensor Fabricated via Flash Nanoprecipitation
Cell state transitions are fundamental in biology, determining how cells respond to
environmental stimuli and adapt to diseases and treatments. Cell surface-based sensing of …
environmental stimuli and adapt to diseases and treatments. Cell surface-based sensing of …