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Multistability in physical and living systems
AN Pisarchik, AE Hramov - Cham: Springer, 2022 - Springer
Multistability is ubiquitous in nature. From a mathematical point of view, multistability is the
coexistence of stable states (attractors) for the same set of system parameters. The …
coexistence of stable states (attractors) for the same set of system parameters. The …
From microbial communities to distributed computing systems
A distributed biological system can be defined as a system whose components are located
in different subpopulations, which communicate and coordinate their actions through …
in different subpopulations, which communicate and coordinate their actions through …
Topology-dependent interference of synthetic gene circuit function by growth feedback
R Zhang, J Li, J Melendez-Alvarez, X Chen… - Nature chemical …, 2020 - nature.com
Growth-mediated feedback between synthetic gene circuits and host organisms leads to
diverse emerged behaviors, including growth bistability and enhanced ultrasensitivity …
diverse emerged behaviors, including growth bistability and enhanced ultrasensitivity …
A single layer artificial neural network type architecture with molecular engineered bacteria for reversible and irreversible computing
Here, we adapted the basic concept of artificial neural networks (ANNs) and experimentally
demonstrate a broadly applicable single layer ANN type architecture with molecular …
demonstrate a broadly applicable single layer ANN type architecture with molecular …
Two-Layered Microfluidic Devices for High-Throughput Dynamic Analysis of Synthetic Gene Circuits in E. coli
Y Sun, F Zhang, L Li, K Chen, S Wang… - ACS Synthetic …, 2022 - ACS Publications
Escherichia coli is a common chassis for synthetic gene circuit studies. In addition to the
dose–response of synthetic gene circuits, the analysis of dynamic responses is also an …
dose–response of synthetic gene circuits, the analysis of dynamic responses is also an …
Tristability in mitochondrial permeability transition pore opening
Mitochondrial permeability transition pore (PTP), a key regulator of cell life and death
processes, is triggered by calcium ions (Ca 2+) and potentiated by reactive oxygen species …
processes, is triggered by calcium ions (Ca 2+) and potentiated by reactive oxygen species …
Dynamic mechanism of phase variation in bacteria based on multistable gene regulatory networks
AV Galimzyanov, RN Tchuraev - Journal of Theoretical Biology, 2022 - Elsevier
Phase variation, which causes splitting the homogeneous bacterial population into
subpopulations of the cells with different and reversible activity of the same variable genes …
subpopulations of the cells with different and reversible activity of the same variable genes …
Theoretical investigation of functional responses of bio-molecular assembly networks
Cooperative protein–protein and protein–DNA interactions form programmable complex
assemblies, often performing non-linear gene regulatory operations involved in signal …
assemblies, often performing non-linear gene regulatory operations involved in signal …
Stability and robustness of unbalanced genetic toggle switches in the presence of scarce resources
C Yong, A Gyorgy - Life, 2021 - mdpi.com
While the vision of synthetic biology is to create complex genetic systems in a rational
fashion, system-level behaviors are often perplexing due to the context-dependent dynamics …
fashion, system-level behaviors are often perplexing due to the context-dependent dynamics …
A multiscale computational model of YAP signaling in epithelial fingering behavior
N Mukhtar, EN Cytrynbaum, L Edelstein-Keshet - Biophysical Journal, 2022 - cell.com
In epithelial-mesenchymal transition (EMT), cells organized into sheets break away and
become motile mesenchymal cells. EMT plays a crucial role in wound healing, embryonic …
become motile mesenchymal cells. EMT plays a crucial role in wound healing, embryonic …