Empirical and philosophical problems with the subspecies rank

FT Burbrink, BI Crother, CM Murray… - Ecology and …, 2022 - Wiley Online Library
Species‐level taxonomy derives from empirical sources (data and techniques) that assess
the existence of spatiotemporal evolutionary lineages via various species “concepts.” These …

What have we learned from the first 500 avian genomes?

GA Bravo, CJ Schmitt… - Annual Review of Ecology …, 2021 - annualreviews.org
The increased capacity of DNA sequencing has significantly advanced our understanding of
the phylogeny of birds and the proximate and ultimate mechanisms molding their genomic …

Three problems in the genetics of speciation by selection

D Schluter, LH Rieseberg - Proceedings of the National …, 2022 - National Acad Sciences
Speciation is the process by which barriers to gene flow evolve between populations.
Although we now know that speciation is largely driven by natural selection, knowledge of …

Genetics and the evolution of prezygotic isolation

RM Merrill, H Arenas-Castro… - Cold Spring …, 2024 - cshperspectives.cshlp.org
The significance of prezygotic isolation for speciation has been recognized at least since the
Modern Synthesis. However, fundamental questions remain. For example, how are genetic …

Rapid adaptive radiation of Darwin's finches depends on ancestral genetic modules

CJ Rubin, ED Enbody, MP Dobreva, A Abzhanov… - Science …, 2022 - science.org
Recent adaptive radiations are models for investigating mechanisms contributing to the
evolution of biodiversity. An unresolved question is the relative importance of new mutations …

A supergene underlies linked variation in color and morphology in a Holarctic songbird

ER Funk, NA Mason, S Pálsson, T Albrecht… - Nature …, 2021 - nature.com
The genetic architecture of a phenotype can have considerable effects on the evolution of a
trait or species. Characterizing genetic architecture provides insight into the complexity of a …

Hybrid origin of a primate, the gray snub-nosed monkey

H Wu, Z Wang, Y Zhang, L Frantz, C Roos, DM Irwin… - Science, 2023 - science.org
Hybridization is widely recognized as promoting both species and phenotypic diversity.
However, its role in mammalian evolution is rarely examined. We report historical …

A deep-learning approach for inference of selective sweeps from the ancestral recombination graph

HA Hejase, Z Mo, L Campagna… - Molecular Biology and …, 2022 - academic.oup.com
Detecting signals of selection from genomic data is a central problem in population genetics.
Coupling the rich information in the ancestral recombination graph (ARG) with a powerful …

Selective sweeps on different pigmentation genes mediate convergent evolution of island melanism in two incipient bird species

L Campagna, Z Mo, A Siepel, JAC Uy - PLoS Genetics, 2022 - journals.plos.org
Insular organisms often evolve predictable phenotypes, like flightlessness, extreme body
sizes, or increased melanin deposition. The evolutionary forces and molecular targets …

The genomics of adaptation in birds

L Campagna, DPL Toews - Current Biology, 2022 - cell.com
Organismal adaptations are the hallmark of natural selection. Studies of adaptations in avian
systems have been central to key conceptual and empirical advances in the field of …