Brettanomyces bruxellensis: Overview of the genetic and phenotypic diversity of an anthropized yeast

J Harrouard, C Eberlein, P Ballestra… - Molecular …, 2023 - Wiley Online Library
Human‐associated microorganisms are ideal models to study the impact of environmental
changes on species evolution and adaptation because of their small genome, short …

Genome copy number predicts extreme evolutionary rate variation in plant mitochondrial DNA

KD Zwonitzer, LG Tressel, Z Wu, S Kan, AK Broz… - Proceedings of the …, 2024 - pnas.org
Nuclear and organellar genomes can evolve at vastly different rates despite occupying the
same cell. In most bilaterian animals, mitochondrial DNA (mtDNA) evolves faster than …

Defining coalescent genes: theory meets practice in organelle phylogenomics

JJ Doyle - Systematic biology, 2022 - academic.oup.com
The species tree paradigm that dominates current molecular systematic practice infers
species trees from collections of sequences under assumptions of the multispecies …

Genomic Adaptation of Saccharomyces Species to Industrial Environments

K Giannakou, M Cotterrell, D Delneri - Frontiers in Genetics, 2020 - frontiersin.org
The budding yeast has been extensively studied for its physiological performance in
fermentative environments and, due to its remarkable plasticity, is used in numerous …

Macroevolutionary diversity of traits and genomes in the model yeast genus Saccharomyces

D Peris, EJ Ubbelohde, MC Kuang, J Kominek… - Nature …, 2023 - nature.com
Species is the fundamental unit to quantify biodiversity. In recent years, the model yeast
Saccharomyces cerevisiae has seen an increased number of studies related to its …

Mitochondrial genome diversity across the subphylum Saccharomycotina

JF Wolters, AL LaBella, DA Opulente, A Rokas… - Frontiers in …, 2023 - frontiersin.org
Introduction Eukaryotic life depends on the functional elements encoded by both the nuclear
genome and organellar genomes, such as those contained within the mitochondria. The …

Genomic Evidence of an Ancient East Asian Divergence Event in Wild Saccharomyces cerevisiae

DP Bendixsen, N Gettle, C Gilchrist… - Genome Biology and …, 2021 - academic.oup.com
Comparative genome analyses have suggested East Asia to be the cradle of the
domesticated microbe Brewer's yeast (Saccharomyces cerevisiae), used in the food and …

Contrasting Genomic Evolution Between Domesticated and Wild Kluyveromyces lactis Yeast Populations

A Friedrich, JS Gounot, A Tsouris… - Genome biology and …, 2023 - academic.oup.com
The process of domestication has variable consequences on genome evolution leading to
different phenotypic signatures. Access to the complete genome sequences of a large …

Rampant nuclear–mitochondrial–plastid phylogenomic discordance in globally distributed calcifying microalgae

TT Kao, TH Wang, C Ku - New Phytologist, 2022 - Wiley Online Library
Incongruent phylogenies have been widely observed between nuclear and plastid or
mitochondrial genomes in terrestrial plants and animals. However, few studies have …

Influence of Pleistocene climate fluctuations on the demographic history and distribution of the critically endangered Chinese pangolin (Manis pentadactyla)

S Wei, S Sun, H Dou, F An, H Gao, C Guo, Y Hua - BMC zoology, 2022 - Springer
Background Pleistocene climate fluctuations have strongly modified species genetic
diversity and distributions. The Chinese pangolin (Manis pentadactyla) has been recognized …